Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1880 ATGGTTCGAAGTGTGTATAGTTGGAGCCTAATGTCTTCGCCAGTTCTGACTGCTCAAGAGGAAGGGGAGAACAACACGTCAACAGTAACTTCTTCACGATCCTTGGATCTTACCTCCCAAAATGCAACTGGATTAAAAGAGCGCAATTACCTAGGGTTATCAGATTGCTCATCAGTGGAGAGCTCTACTGTTCCAAGCGACTCTGATGAGAAAAGGGACAATCTAAATTTGAAGGCTACGGAATTGAGGTTGGGTCTTCCAGGATCCCAATCACCTGAAAGGAATGATAGCTCGACAAAACTTAATGAGAAGCCACTGTTTCCTTTGCTTCCAACAAAAGATGGAATCTGCTCATTGTCCCAGAAAATCGTGGTTACAGGCAACAAAAGGGGATTCTCTGACACCGTGGATAGGTTCCCTGAGATGAAGTTTCCCGGGAATTCAGGGGTAAATGTGCTGCTTTCTCCTAGATCTGCTAGAGCTCAGCCAACAACAACAAAAGAAATGCCGACTAAGGTATTGCGAGAACGGCCTTGTGCAACTAATGGAACAGGCCATAACAAAACGGATGCTTCTATTGTTGGCAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGGTCATTTAGGAAGAACTCGTTGTCTGTCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCGGCTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGATCTGAGGAGTTACAACACATACCAGGATCTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTATCCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGATCTGATGCCATTGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGAAGGAGCTAG 1071 0.4547 MVRSVYSWSLMSSPVLTAQEEGENNTSTVTSSRSLDLTSQNATGLKERNYLGLSDCSSVESSTVPSDSDEKRDNLNLKATELRLGLPGSQSPERNDSSTKLNEKPLFPLLPTKDGICSLSQKIVVTGNKRGFSDTVDRFPEMKFPGNSGVNVLLSPRSARAQPTTTKEMPTKVLRERPCATNGTGHNKTDASIVGSAPASKAQVVGWPPIRSFRKNSLSVTSKNNDEVDGKPAPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFILGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKRRS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1880 356 MobiDBLite consensus disorder prediction 56 106 - -
Prci5g1880 356 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 75 343 IPR003311 GO:0005634|GO:0006355
Prci5g1880 356 ProSiteProfiles PB1 domain profile. 236 340 IPR000270 GO:0005515
Prci5g1880 356 Gene3D - 233 349 - -
Prci5g1880 356 FunFam Auxin-responsive protein 231 348 - -
Prci5g1880 356 Pfam AUX/IAA family 80 347 IPR033389 -
Prci5g1880 356 SUPERFAMILY CAD & PB1 domains 233 337 - -
Prci5g1880 356 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1880 Prci-Chr5 36809825 36814359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1880 240 346 B3 DNA Binding Superfamily AT4G23980 29.907 7.25e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci5g1880 AUX_IAA 1.4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1880 K14484 - gmx:100500373 524.242