Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1879 ATGTCTTCGCCAGTTCTGACTGCTCAAGAGGAAGGGGAGAACAACACGTCAACAGTAACTTCTTCACGATCCTTGGATCTTACCTCCCAAAATGCAACTGGATTAAAAGAGCGCAATTACCTAGGGTTATCAGATTGCTCATCAGTGGAGAGCTCTACTGTTCCAAGCGACTCTGATGAGAAAAGGGACAATCTAAATTTGAAGGCTACGGAATTGAGGTTGGGTCTTCCAGGATCCCAATCACCTGAAAGGAATGATAGCTCGACAAAACTTAATGAGAAGCCACTGTTTCCTTTGCTTCCAACAAAAGATGGAATCTGCTCATTGTCCCAGAAAATCGTGGTTACAGGCAACAAAAGGGGATTCTCTGACACCGTGGATAGGTTCCCTGAGATGAAGTTTCCCGGGAATTCAGGGGTAAATGTGCTGCTTTCTCCTAGATCTGCTAGAGCTCAGCCAACAACAACAAAAGAAATGCCGACTAAGGTATTGCGAGAACGGCCTTGTGCAACTAATGGAACAGGCCATAACAAAACGGATGCTTCTATTGTTGGCAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGGTCATTTAGGAAGAACTCGTTGTCTGTCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCGGCTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGATCTGAGGAGTTACAACACATACCAGGATCTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTATCCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGATCTGATGCCATTGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGAAGGAGCTAG 1041 0.4553 MSSPVLTAQEEGENNTSTVTSSRSLDLTSQNATGLKERNYLGLSDCSSVESSTVPSDSDEKRDNLNLKATELRLGLPGSQSPERNDSSTKLNEKPLFPLLPTKDGICSLSQKIVVTGNKRGFSDTVDRFPEMKFPGNSGVNVLLSPRSARAQPTTTKEMPTKVLRERPCATNGTGHNKTDASIVGSAPASKAQVVGWPPIRSFRKNSLSVTSKNNDEVDGKPAPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFILGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKRRS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1879 346 MobiDBLite consensus disorder prediction 1 37 - -
Prci5g1879 346 FunFam Auxin-responsive protein 221 338 - -
Prci5g1879 346 Gene3D - 223 339 - -
Prci5g1879 346 SUPERFAMILY CAD & PB1 domains 223 327 - -
Prci5g1879 346 MobiDBLite consensus disorder prediction 1 96 - -
Prci5g1879 346 Pfam AUX/IAA family 70 337 IPR033389 -
Prci5g1879 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 333 IPR003311 GO:0005634|GO:0006355
Prci5g1879 346 ProSiteProfiles PB1 domain profile. 226 330 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1879 Prci-Chr5 36809610 36814359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1879 230 336 B3 DNA Binding Superfamily AT4G23980 29.907 6.74e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci5g1879 AUX_IAA 1.3e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1879 K14484 - gmx:100500373 524.242