Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1876 ATGGACCTTTCACAAGTTGGCTTTCTGGAAGAGTTACTTGCTCCAAGAAGAGGAGATTCATGGAACACAATGTCCTCTGGCTTCAATGATCTATTCTCTTGTACCTCTTGGACCTTTGACCCTTTTGATGACAACCCTTCTGCCTTCTCTACCTTCAATCCGCCATTTTCTGCTCTACCGGCACCTCTCATAGACCAGAGACTTGAATATTCCTACCTTCTTGATGGCTTTACAGGGAATACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGACCTCGCCTTTCTGGGTTTTGAGAATCAGAGTTCTGAAGAAGGAAACGCCAATAATAATGCCAGTAATTGCTGCAAAATCGAAGAACGAGCCCTGGAAACTCCGGTGTTCAACATGGGTGTGTATTGTGGGGAGAAGAAACCCAAATCGAAGAAGCTACAAGGGCAGCCTTCAAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGCCTCAATGATCGCTTGTCCATGCTGAGATCTATCGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGGAAAAGATAAGCAATTTGCAGGAAGAAATGGAGAGGGAGGGTGAAAACAATCAGTTAAACTTCATAGGCATTTCCAAGGAAGTGAAGCCAAATGAAGTAACGGTGAGAAATTCCCCTAAGTTTGAGGTTGAGAGGAAGGACCAAGACACTAGGATCAATATCTGCTGTGCCACAAAGCCTGGGTTACTACTCTCAACTGTGAATACCTTAGAAGCATTGGGTCTTGAGATCGAACAATGCGTCATAAGTGGCTTCAATGATTTCACAATGCAAGCATCTTGCTCGGAGGTGGCTGAGCAAAGAGCTTGTATTGACTCTGAAGAGATTAAGGAAGCACTGTTCAGAAATGCAGGTTATGGTGGGAGATGCCTTTAG 972 0.4444 MDLSQVGFLEELLAPRRGDSWNTMSSGFNDLFSCTSWTFDPFDDNPSAFSTFNPPFSALPAPLIDQRLEYSYPXLDGFTGNTVDSAPPLQAHEDEDLAFLGFENQSSEEGNANNNASNCCKIEERALETPVFNMGVYCGEKKPKSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISNLQEEMEREGENNQLNFIGISKEVKPNEVTVRNSPKFEVERKDQDTRINICCATKPGLLLSTVNTLEALGLEIEQCVISGFNDFTMQASCSEVAEQRACIDSEEIKEALFRNAGYGGRCL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1876 324 Coils Coil 189 216 - -
Prci5g1876 324 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 318 - -
Prci5g1876 324 SMART finulus 156 205 IPR011598 GO:0046983
Prci5g1876 324 Gene3D - 142 217 IPR036638 GO:0046983
Prci5g1876 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 217 IPR036638 GO:0046983
Prci5g1876 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Prci5g1876 324 Pfam Helix-loop-helix DNA-binding domain 156 199 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1876 Prci-Chr5 36780938 36782515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1876 141 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.935 2.64e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1876 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1876 - - gmx:100806571 409.838