Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1870 ATGGGAAGAGGGAAGATTGTGATCCGAAGGATTGATGATACAGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGATGAAGAAAGCGAGAGAGTTAGCAATCCTGTGTGATGTAGAAGTTGGACTCGTTATCTTCTCCAGCACTGGAAAGCTTCATGAATATGCCAGTTCCAGCATGAAATCAGTGGTTGAGAGATATAACAGCTGCAAGGAGGAACATGAACGACTGATGAATCCAGAATCAGAGGTCAAGTTCTGGCAAAAGGAGGCAGAAACACTAAGGCAGCTGGTACATAATCTACAAGAAAACCATAGGAAATTAATGGGAGAACAGCTTTATGGTTTAAGTTTCAAGAACCTACAAGATCTCGAGGATCAACTAGAGATAAGTCTCCGAGGTGTCCGCATAAAAAAGGAACAAACTCTAGCAGAAGAAATCCGAGAGCTGAGAAGAAAGGGAGACGCTGTGCATCAGCAAAACGTCGAACTCTGTAAGAAGGTAAACCTCATTCAACAAGAAAACATGCAACTATACAATGAGATGCGGCTGTAG 561 0.4278 MGRGKIVIRRIDDTASRQVTFSKRRKGLMKKARELAILCDVEVGLVIFSSTGKLHEYASSSMKSVVERYNSCKEEHERLMNPESEVKFWQKEAETLRQLVHNLQENHRKLMGEQLYGLSFKNLQDLEDQLEISLRGVRIKKEQTLAEEIRELRRKGDAVHQQNVELCKKVNLIQQENMQLYNEMRL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1870 186 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Prci5g1870 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci5g1870 186 Coils Coil 86 113 - -
Prci5g1870 186 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g1870 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci5g1870 186 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g1870 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Prci5g1870 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci5g1870 186 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Prci5g1870 186 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci5g1870 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci5g1870 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci5g1870 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci5g1870 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1870 Prci-Chr5 36698665 36710264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1870 1 181 MADS-box Gene Family AT2G22630 65.746 9.82e-85 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci5g1870 K-box 1.2e-24 No_clan