Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1862 ATGAAGAAGGTAGGTGAGTTAAGGAAACAGGCTTTCTTGCTGTGGTGGTTTGGAATGACTGTGCTGTTCTGCTTCTTGCCGGGTGATTGTTTCCCTTATTACGAGAAGACCACAGTTAGAAGAGAGTTGAGGGGAGTAAACGCTTCAAATCCCAGACCTTCTATATCTGCAGTGAAGCTCAATACAGAAGATCATGATCAGGTGGTGATTGAGAATGGCATTGTTCAAGTCACTCTGTCCAGTCCCGAGGGGTATATTCTCGGGATATCCTATGATGGAATCGACAATTTACTAGAATCTCGTAACGATGAACAAGACAGGGGGTATTTTGACGTGGTCTGGAATAAGCCTGGGAAAAACAGTACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCATTGGACGAAAACCAAGTGGAGATTTCGTTTGTAAGAACTTGGACACCTTCCCTGGAAGGCGAAAATGTCCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCAGAAGTGCAGGTTGATCAAATCAGGAACGTCTTCAAGCTCCAGGAAGACAGGTTCGTCTACATGGCTATATCAGACGCGAGGCAAAGATACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCTGTTCTTTTAACCAATCCATCTAATGAAGACTTTAGAGGGGAGGTGGACGACAAATATCAGTACTCATGTGAGAACAAAGACAACAGGGTGCATGGATGGGTTAGCGTTGATGCCGAAGCACCCGTGGGCTTTTGGGTAATAACGCCCAGCAACGAGTTTCGCAATGCTGGGCCCATCAAACAAGACCTTACATCTCATGTGGGCCCCTTTGCCCTCTCTATGTTTGTGAGCACTCATTATGCTGGGAAGGAGATAACTATGGAATTTCAAGGAGGAGAGACTTACAAAAAGGTTTTTGGCCCTATTTTTGTGTATTTGAACTCTGTTTCAAACTCTGAGAATCCACTAACCCTCTGGACAGATGCTGTACAACAGATGTCTAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCACAATCGCAAGCTTACATTCCACCCACTCAACGTGGAAGCGTGGTTGGAAGATTACTGGTTCAAGATTGGTACATCAGAGGAGGTAGATTTCTATTCGCTAACTCTGCATATGTTGGTCTAGCTCTTCCTGGTGCTGCTGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTTTGGACTCAAGCAAACAAGAAAGGTTATTTTGTGATGAACAATGTTGTTCCTGGAGACTACAACTTGTTTGCATGGGTTCCAGGCTTTATTGGTGATTACAGATATAATGCTACCGTCACCATTACACCAGGTAGTGTAATCAAATTGGATTCACTTGTTTATAATCCTCCAAGAAAGGGATCCACTGTTTGGGAAATTGGAGTCCCTGATCGCTCAGCTGCAGAATTCTATATCCCAGACCCTTACCCTACACTCATGAACAAACTATATAATGAGCAACCCAAAGACAAGTTTAGACAATATGGCTTATGGGAACATTATGCTGATTTATATCCAAACAGTGATCTAGTTTACACTGTTGGTGCTAGTTCGTATGATCAAGATTGGTTCTATGCTCATGTTACAAGGAACACAGGAAATAGGACATACCAGGCAACAACATGGCAGATTATATTCAATTTGCAATATGACCCATTCAAAGGAAATTACACCCTCCAACTAGCCTTGGCAGCTGCCGCTAATTCTGTTCTAAAGATTTGGATCAATGAGCAAGACAGTGTACCTCCTCTGTTCGAAACTGGAAAATTTGGAGGGGACAGTGCCATACCAAGGCATGGAATCCATGGATTGTACTGGTTGTTCAGCATTGACGTTCCAAGTGATCTTTTAGTGAAAGGGAACAATACTATCCATTTACAACAGTCACTTGCCATAAGTCCTTTTCAAGGAGTGATGTATGACTATATACGCTTAGAAAGACCACCGACTCTAAGGACTTGA 2076 0.4287 MKKVGELRKQAFLLWWFGMTVLFCFLPGDCFPYYEKTTVRRELRGVNASNPRPSISAVKLNTEDHDQVVIENGIVQVTLSSPEGYILGISYDGIDNLLESRNDEQDRGYFDVVWNKPGKNSTFQRIHGTEFSVVSLDENQVEISFVRTWTPSLEGENVPINIDQRYILRRGDSGFYSYTIFERPEGFPEVQVDQIRNVFKLQEDRFVYMAISDARQRYMPTMKDRETGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENKDNRVHGWVSVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEITMEFQGGETYKKVFGPIFVYLNSVSNSENPLTLWTDAVQQMSKEVKSWPYDFPQSQAYIPPTQRGSVVGRLLVQDWYIRGGRFLFANSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVMNNVVPGDYNLFAWVPGFIGDYRYNATVTITPGSVIKLDSLVYNPPRKGSTVWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPKDKFRQYGLWEHYADLYPNSDLVYTVGASSYDQDWFYAHVTRNTGNRTYQATTWQIIFNLQYDPFKGNYTLQLALAAAANSVLKIWINEQDSVPPLFETGKFGGDSAIPRHGIHGLYWLFSIDVPSDLLVKGNNTIHLQQSLAISPFQGVMYDYIRLERPPTLRT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1862 691 CDD RGL4_N 61 346 - -
Prci5g1862 691 FunFam Rhamnogalacturonate lyase B 381 481 - -
Prci5g1862 691 Pfam Rhamnogalacturonate lyase family 56 251 IPR010325 -
Prci5g1862 691 SUPERFAMILY Starch-binding domain-like 380 483 IPR013784 GO:0030246
Prci5g1862 691 SUPERFAMILY Galactose mutarotase-like 62 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci5g1862 691 CDD RGL4_C 496 684 - -
Prci5g1862 691 CDD RGL4_M 384 484 IPR029413 -
Prci5g1862 691 Pfam Polysaccharide lyase family 4, domain II 408 480 IPR029413 -
Prci5g1862 691 SUPERFAMILY Galactose-binding domain-like 492 684 IPR008979 -
Prci5g1862 691 Gene3D - 491 684 - -
Prci5g1862 691 Gene3D - 60 363 IPR014718 GO:0030246
Prci5g1862 691 Gene3D - 380 483 - -
Prci5g1862 691 Pfam Polysaccharide lyase family 4, domain III 494 683 IPR029411 -
Prci5g1862 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1862 Prci-Chr5 36626212 36631524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1862 55 686 Polysaccharide Lyase AT1G09890 55.189 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1862 K18195 - gmx:100776664 1027.31