Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1861 ATGAACGTAGGAGAGAAAAGGAAACGAGTTTTCCTGTTGTGGCTGGGAATGAATATGCACCTTTTCTTTTCGCAATGTGGTTGTTCTGACAACATGATCTTAGAAAGTAGCAGAAAAATCTTGAGGGGAAATATGAATGGTACTCCAAAACCCAGTTCTGCAGTTAAGCTGAATACAGAACATCGTGGGAAAGTAGCGATTGACAATGGCATAGTCCAGGTCACTCTGACAAGACCCGAGGGCAATGTTGTGGGAATATCATATAATGGAATCGACAATGTACTAGAATCTCGTAATGATGAACAAGACAGAGGGTATTTTGATGTGGTTTGGAATAAACCAGGAAAAAAAAGTAATTATCGTCAGAGAATCGACGGGACAAAGTTTTCAATTGTAGCAGCAGACAAAAATCAAGTGGAGATCTCGTTTATGAGAACATGGACATCTTCCATGGAAGGCAAAAGTGCCCCCATCAACGTAGACCAAAGGTTTATATTGCGACGAGGCAGTTCCGGATTTTACTGTTACATTATATTCGAGCGACCAGAAGGATTTCCAGCAGTGGAGGTTGAGCAAATCAGGATGGTTTACAAGCTTCAGGAAGACAGGTTCCACTACATGGCCATATCAGACACTAGGCAGCGATACATGCCAACAATGGAAGATAGAAAAAGAGGGAAAGTCTTGGCTTATCCTGAAGCAGTTCTCTTAACCAACCCGTCCAACGAAATCTTTAAAGGAGAGGTGGACGATAAATACCAGTATTCTTGTGAGAATGAAGACAACAGAGTGCACGGTTGGATTAGCATGAATTCTGATGCAGCCATGGGCTTTTGGATGATAACACCTAGTAACGAGTTTCGCAATGGTGGGCCCGTCAAGCAAGATCTTACCTCTCATGTTGGCCCTTTTATCCTCTCTATGTTTATGAGTATGCACTTCGGTGGGAAGGATTTAGCCATGGAATTTCGAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTCTATCTTAACTCCATTTCAAGCAACGTGAGTACACAAACGCTCTGGCGAGATGCTGTACAACAAATGTCTAATGAAGTCCGAAGCTGGCCTTATGATTTCCCAAAATCACAAGATTACATTCCACCCATCAAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATCATTATATCGAAGGAGGCAGGTTTCAAAATGCTAAGTCAGCCCATGTTGGTTTGGCTTTGCCTGGTGTTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACCAAAGCTGACATGGAGGGCTATTTTGTGATAAAGAATGTTATACCAGGAAAGTATAATTTATTTGCATGGGTTCCTGGCTTCATTGGTGATTATAAATATAATGCAACAATCACCATCACACCAGGGTGTTCGATCAAATTGGGTTTTCTTGTATATAGTCCACCAAGAAATGGTCTCACCGTTTGGGAAATCGGTGTCCCCGATCGCTCAGCAGCAGAATTCTATATCCCTAACGCAAATCATGAATTTCTCAACAAATTATACAATAATCGTTCCAGAGAAAAGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTATATCCAAAAAATGATCAAGTTTACACTGTTGGTGTTGACTCTCATGACAAGGATTGGTTCTTTGCTCATGTTACCAGGTTTGGTTGA 1707 0.4177 MNVGEKRKRVFLLWLGMNMHLFFSQCGCSDNMILESSRKILRGNMNGTPKPSSAVKLNTEHRGKVAIDNGIVQVTLTRPEGNVVGISYNGIDNVLESRNDEQDRGYFDVVWNKPGKKSNYRQRIDGTKFSIVAADKNQVEISFMRTWTSSMEGKSAPINVDQRFILRRGSSGFYCYIIFERPEGFPAVEVEQIRMVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKVLAYPEAVLLTNPSNEIFKGEVDDKYQYSCENEDNRVHGWISMNSDAAMGFWMITPSNEFRNGGPVKQDLTSHVGPFILSMFMSMHFGGKDLAMEFREGETYKKVFGPVFVYLNSISSNVSTQTLWRDAVQQMSNEVRSWPYDFPKSQDYIPPIKRGSVAGRLLVQDHYIEGGRFQNAKSAHVGLALPGVAGSWQRESKGYQFWTKADMEGYFVIKNVIPGKYNLFAWVPGFIGDYKYNATITITPGCSIKLGFLVYSPPRNGLTVWEIGVPDRSAAEFYIPNANHEFLNKLYNNRSREKFRQYGLWARYAELYPKNDQVYTVGVDSHDKDWFFAHVTRFG 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1861 568 Pfam Polysaccharide lyase family 4, domain III 492 566 IPR029411 -
Prci5g1861 568 SUPERFAMILY Galactose-binding domain-like 490 566 IPR008979 -
Prci5g1861 568 Gene3D - 57 358 IPR014718 GO:0030246
Prci5g1861 568 Gene3D - 379 479 - -
Prci5g1861 568 FunFam Rhamnogalacturonate lyase B 379 479 - -
Prci5g1861 568 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 566 - -
Prci5g1861 568 SUPERFAMILY Starch-binding domain-like 380 482 IPR013784 GO:0030246
Prci5g1861 568 Pfam Rhamnogalacturonate lyase family 48 249 IPR010325 -
Prci5g1861 568 SUPERFAMILY Galactose mutarotase-like 59 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci5g1861 568 CDD RGL4_M 382 480 IPR029413 -
Prci5g1861 568 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Prci5g1861 568 CDD RGL4_N 58 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1861 Prci-Chr5 36618342 36622154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1861 53 566 Polysaccharide Lyase AT1G09890 55.598 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1861 K18195 - gmx:100776664 756.903