Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1860 ATGAACGTAGGAGAGAAAAGGAAACGAGTTTTCCTGTTGTGGCTGGGAATGAATATGCACCTTTTCTTTTCGCAATGTGGTTGTTCTGACAACATGATCTTAGAAAGTAGCAGAAAAATCTTGAGGGGAAATATGAATGGTACTCCAAAACCCAGTTCTGCAGTTAAGCTGAATACAGAACATCGTGGGAAAGTAGCGATTGACAATGGCATAGTCCAGGTCACTCTGACAAGACCCGAGGGCAATGTTGTGGGAATATCATATAATGGAATCGACAATGTACTAGAATCTCGTAATGATGAACAAGACAGAGGGTATTTTGATGTGGTTTGGAATAAACCAGGAAAAAAAAGTAATTATCGTCAGAGAATCGACGGGACAAAGTTTTCAATTGTAGCAGCAGACAAAAATCAAGTGGAGATCTCGTTTATGAGAACATGGACATCTTCCATGGAAGGCAAAAGTGCCCCCATCAACGTAGACCAAAGGTTTATATTGCGACGAGGCAGTTCCGGATTTTACTGTTACATTATATTCGAGCGACCAGAAGGATTTCCAGCAGTGGAGGTTGAGCAAATCAGGATGGTTTACAAGCTTCAGGAAGACAGGTTCCACTACATGGCCATATCAGACACTAGGCAGCGATACATGCCAACAATGGAAGATAGAAAAAGAGGGAAAGTCTTGGCTTATCCTGAAGCAGTTCTCTTAACCAACCCGTCCAACGAAATCTTTAAAGGAGAGGTGGACGATAAATACCAGTATTCTTGTGAGAATGAAGACAACAGAGTGCACGGTTGGATTAGCATGAATTCTGATGCAGCCATGGGCTTTTGGATGATAACACCTAGTAACGAGTTTCGCAATGGTGGGCCCGTCAAGCAAGATCTTACCTCTCATGTTGGCCCTTTTATCCTCTCTATGTTTATGAGTATGCACTTCGGTGGGAAGGATTTAGCCATGGAATTTCGAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTCTATCTTAACTCCATTTCAAGCAACGTGAGTACACAAACGCTCTGGCGAGATGCTGTACAACAAATGTCTAATGAAGTCCGAAGCTGGCCTTATGATTTCCCAAAATCACAAGATTACATTCCACCCATCAAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATCATTATATCGAAGGAGGCAGGTTTCAAAATGCTAAGTCAGCCCATGTTGGTTTGGCTTTGCCTGGTGTTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACCAAAGCTGACATGGAGGGCTATTTTGTGATAAAGAATGTTATACCAGGAAAGTATAATTTATTTGCATGGGTTCCTGGCTTCATTGGTGATTATAAATATAATGCAACAATCACCATCACACCAGGGTGTTCGATCAAATTGGGTTTTCTTGTATATAGTCCACCAAGAAATGGTCTCACCGTTTGGGAAATCGGTGTCCCCGATCGCTCAGCAGCAGAATTCTATATCCCTAACGCAAATCATGAATTTCTCAACAAATTATACAATAATCGTTCCAGAGAAAAGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTATATCCAAAAAATGATCAAGTTTACACTGTTGGTGTTGACTCTCATGACAAGGATTGGTTCTTTGCTCATGTTACCAGGGACATGGGAAATAAAAAGTATCAACCAACTACATGGCAGATTAAATTTGAACTTCTAAGACGCGATCTATTAGAAGGAAATTACACCCTACGACTGGCCTTAGCATCAGCCACTATTTCCAAGTTGCAGGTTTGGTTGAATGAGCAAGGTAATAAGAAGCGTCCCCTATTTGAAACTGGAATGCTAAGAGGAGACAATGCTATAGCAAGGCATGGAATCCATGGATTGTATTGGTTGTTCAGCATTGATGTTTCAAGCAATAATTTAGTCAGAGGGAACAACACTGTCTATTTAAAACAGCCACTTGCTGTTAATCCTTTCCAAGGACTTATGTATGACTATATACGTTTAGAGAGACCTCCCACTCTAAGAACTTGA 2076 0.4133 MNVGEKRKRVFLLWLGMNMHLFFSQCGCSDNMILESSRKILRGNMNGTPKPSSAVKLNTEHRGKVAIDNGIVQVTLTRPEGNVVGISYNGIDNVLESRNDEQDRGYFDVVWNKPGKKSNYRQRIDGTKFSIVAADKNQVEISFMRTWTSSMEGKSAPINVDQRFILRRGSSGFYCYIIFERPEGFPAVEVEQIRMVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKVLAYPEAVLLTNPSNEIFKGEVDDKYQYSCENEDNRVHGWISMNSDAAMGFWMITPSNEFRNGGPVKQDLTSHVGPFILSMFMSMHFGGKDLAMEFREGETYKKVFGPVFVYLNSISSNVSTQTLWRDAVQQMSNEVRSWPYDFPKSQDYIPPIKRGSVAGRLLVQDHYIEGGRFQNAKSAHVGLALPGVAGSWQRESKGYQFWTKADMEGYFVIKNVIPGKYNLFAWVPGFIGDYKYNATITITPGCSIKLGFLVYSPPRNGLTVWEIGVPDRSAAEFYIPNANHEFLNKLYNNRSREKFRQYGLWARYAELYPKNDQVYTVGVDSHDKDWFFAHVTRDMGNKKYQPTTWQIKFELLRRDLLEGNYTLRLALASATISKLQVWLNEQGNKKRPLFETGMLRGDNAIARHGIHGLYWLFSIDVSSNNLVRGNNTVYLKQPLAVNPFQGLMYDYIRLERPPTLRT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1860 691 Pfam Polysaccharide lyase family 4, domain III 492 683 IPR029411 -
Prci5g1860 691 Gene3D - 379 479 - -
Prci5g1860 691 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Prci5g1860 691 FunFam Rhamnogalacturonate lyase B 379 479 - -
Prci5g1860 691 SUPERFAMILY Galactose-binding domain-like 490 684 IPR008979 -
Prci5g1860 691 CDD RGL4_M 382 480 IPR029413 -
Prci5g1860 691 CDD RGL4_N 58 342 - -
Prci5g1860 691 CDD RGL4_C 494 684 - -
Prci5g1860 691 Gene3D - 490 683 - -
Prci5g1860 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 687 - -
Prci5g1860 691 SUPERFAMILY Galactose mutarotase-like 59 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci5g1860 691 SUPERFAMILY Starch-binding domain-like 380 482 IPR013784 GO:0030246
Prci5g1860 691 Gene3D - 57 358 IPR014718 GO:0030246
Prci5g1860 691 Pfam Rhamnogalacturonate lyase family 48 249 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1860 Prci-Chr5 36618163 36622154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1860 53 686 Polysaccharide Lyase AT1G09890 55.329 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1860 K18195 - gmx:100776664 894.419