Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1859 ATGAACGTAGGAGAGAAAAGGAAACGAGTTTTCCTGTTGTGGCTGGGAATGAATATGCACCTTTTCTTTTCGCAATGTGGTTGTTCTGACAACATGATCTTAGAAAGTTCTGCAGTTAAGCTGAATACAGAACATCGTGGGAAAGTAGCGATTGACAATGGCATAGTCCAGGTCACTCTGACAAGACCCGAGGGCAATGTTGTGGGAATATCATATAATGGAATCGACAATGTACTAGAATCTCGTAATGATGAACAAGACAGAGGGTATTTTGATGTGGTTTGGAATAAACCAGGAAAAAAAAGTAATTATCGTCAGAGAATCGACGGGACAAAGTTTTCAATTGTAGCAGCAGACAAAAATCAAGTGGAGATCTCGTTTATGAGAACATGGACATCTTCCATGGAAGGCAAAAGTGCCCCCATCAACGTAGACCAAAGGTTTATATTGCGACGAGGCAGTTCCGGATTTTACTGTTACATTATATTCGAGCGACCAGAAGGATTTCCAGCAGTGGAGGTTGAGCAAATCAGGATGGTTTACAAGCTTCAGGAAGACAGGTTCCACTACATGGCCATATCAGACACTAGGCAGCGATACATGCCAACAATGGAAGATAGAAAAAGAGGGAAAGTCTTGGCTTATCCTGAAGCAGTTCTCTTAACCAACCCGTCCAACGAAATCTTTAAAGGAGAGGTGGACGATAAATACCAGTATTCTTGTGAGAATGAAGACAACAGAGTGCACGGTTGGATTAGCATGAATTCTGATGCAGCCATGGGCTTTTGGATGATAACACCTAGTAACGAGTTTCGCAATGGTGGGCCCGTCAAGCAAGATCTTACCTCTCATGTTGGCCCTTTTATCCTCTCTATGTTTATGAGTATGCACTTCGGTGGGAAGGATTTAGCCATGGAATTTCGAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTCTATCTTAACTCCATTTCAAGCAACGTGAGTACACAAACGCTCTGGCGAGATGCTGTACAACAAATGTCTAATGAAGTCCGAAGCTGGCCTTATGATTTCCCAAAATCACAAGATTACATTCCACCCATCAAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATCATTATATCGAAGGAGGCAGGTTTCAAAATGCTAAGTCAGCCCATGTTGGTTTGGCTTTGCCTGGTGTTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACCAAAGCTGACATGGAGGGCTATTTTGTGATAAAGAATGTTATACCAGGAAAGTATAATTTATTTGCATGGGTTCCTGGCTTCATTGGTGATTATAAATATAATGCAACAATCACCATCACACCAGGGTGTTCGATCAAATTGGGTTTTCTTGTATATAGTCCACCAAGAAATGGTCTCACCGTTTGGGAAATCGGTGTCCCCGATCGCTCAGCAGCAGAATTCTATATCCCTAACGCAAATCATGAATTTCTCAACAAATTATACAATAATCGTTCCAGAGAAAAGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTATATCCAAAAAATGATCAAGTTTACACTGTTGGTGTTGACTCTCATGACAAGGATTGGTTCTTTGCTCATGTTACCAGGGACATGGGAAATAAAAAGTATCAACCAACTACATGGCAGATTAAATTTGAACTTCTAAGACGCGATCTATTAGAAGGAAATTACACCCTACGACTGGCCTTAGCATCAGCCACTATTTCCAAGTTGCAGGTTTGGTTGAATGAGCAAGGTAATAAGAAGCGTCCCCTATTTGAAACTGGAATGCTAAGAGGAGACAATGCTATAGCAAGGCATGGAATCCATGGATTGTATTGGTTGTTCAGCATTGATGTTTCAAGCAATAATTTAGTCAGAGGGAACAACACTGTCTATTTAAAACAGCCACTTGCTGTTAATCCTTTCCAAGGACTTATGTATGACTATATACGTTTAGAGAGACCTCCCACTCTAAGAACTTGA 2028 0.4137 MNVGEKRKRVFLLWLGMNMHLFFSQCGCSDNMILESSAVKLNTEHRGKVAIDNGIVQVTLTRPEGNVVGISYNGIDNVLESRNDEQDRGYFDVVWNKPGKKSNYRQRIDGTKFSIVAADKNQVEISFMRTWTSSMEGKSAPINVDQRFILRRGSSGFYCYIIFERPEGFPAVEVEQIRMVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKVLAYPEAVLLTNPSNEIFKGEVDDKYQYSCENEDNRVHGWISMNSDAAMGFWMITPSNEFRNGGPVKQDLTSHVGPFILSMFMSMHFGGKDLAMEFREGETYKKVFGPVFVYLNSISSNVSTQTLWRDAVQQMSNEVRSWPYDFPKSQDYIPPIKRGSVAGRLLVQDHYIEGGRFQNAKSAHVGLALPGVAGSWQRESKGYQFWTKADMEGYFVIKNVIPGKYNLFAWVPGFIGDYKYNATITITPGCSIKLGFLVYSPPRNGLTVWEIGVPDRSAAEFYIPNANHEFLNKLYNNRSREKFRQYGLWARYAELYPKNDQVYTVGVDSHDKDWFFAHVTRDMGNKKYQPTTWQIKFELLRRDLLEGNYTLRLALASATISKLQVWLNEQGNKKRPLFETGMLRGDNAIARHGIHGLYWLFSIDVSSNNLVRGNNTVYLKQPLAVNPFQGLMYDYIRLERPPTLRT 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1859 675 FunFam Rhamnogalacturonate lyase B 363 463 - -
Prci5g1859 675 Gene3D - 363 463 - -
Prci5g1859 675 Pfam Polysaccharide lyase family 4, domain II 390 462 IPR029413 -
Prci5g1859 675 Pfam Rhamnogalacturonate lyase family 37 233 IPR010325 -
Prci5g1859 675 Pfam Polysaccharide lyase family 4, domain III 476 667 IPR029411 -
Prci5g1859 675 CDD RGL4_M 366 464 IPR029413 -
Prci5g1859 675 CDD RGL4_N 42 326 - -
Prci5g1859 675 CDD RGL4_C 478 668 - -
Prci5g1859 675 Gene3D - 41 342 IPR014718 GO:0030246
Prci5g1859 675 SUPERFAMILY Galactose mutarotase-like 43 328 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci5g1859 675 SUPERFAMILY Galactose-binding domain-like 474 668 IPR008979 -
Prci5g1859 675 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 42 671 - -
Prci5g1859 675 Gene3D - 474 667 - -
Prci5g1859 675 SUPERFAMILY Starch-binding domain-like 364 466 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1859 Prci-Chr5 36618163 36622154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1859 37 670 Polysaccharide Lyase AT1G09890 55.329 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1859 K18195 - gmx:100776664 889.412