Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1858 ATGATGAAAACAATAGGTGTTCAGGTGCCAAAACCACCTTGTTTCTTCCTTCACTGTCGTGTATTGATGGGTGTTCAACTGTTCTTCTTCTTCTTCTTCTTGCTTGCGGGATGTTCTGACATCACCAAATCCAGTGTTGTACGTAAGGTTGAAGGCTCTCATCAATCTGTTACGCTGCAACAAAGTGATGACAAGGTGGTGATGGATAATGGGATTGTTAGCGTTACGCTGACACGGCCAGATGGTAACTTGATTGGAGTATCATATAATGGGATTGATAATCTTCTTGAACCTCGCAATCGTCCTGATAATAGAGGGTATTGGGACTTTTCTTGGAACCCACTGGGTGACCGCAGTAGCTACTACAGATTCAAAGGGACAACGTTTTCCGTTATAATGGAGAACCAAGATCAAGCTGAAGTTTCTTTCTTATACACATGGAATTCTTCCTTGCCTGCAGGAAACATCCCAATGAATGTAGATATAAGGTATATTTTACGCAGAGGCAGTTCAGGATTATATTCATATGCCATATTGGAGCGTTCAGAAGATTTTCCAGCAATTCGGGTGGATGTCTTTCGGCTCGTTTACAAGCTCAGCCAAGACCTGTTCCACTACATGGCTATATCAGACGAAAGGCAAAGAGAAATGCCCACCGCTAAAGATAGATCCAACGGCCAAACCCTTGATTATCCGGAAGCTGTCCTCTTAACCCATCCCAGCAACTCTGATTTCTTAGGAGAGGTGGATGACAAATACATGTACTCGGTGGAGAACAGAGACAACAAAGTGAGCGGATGGGTCACTTTTAACAGTACCAATTCATCATCAGTTGGGTTCTGGATGATTACACCTTCCAACGAATTCCGTAACGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGCCCTGTCACCCTCAACTCTTTCCTTAGCCCGCACTATGCTGGGAAGGACATGTCCATGATATTCAAACAAGGCGAGTCCTACACGAAGGTGTTCGGCCCCACTTTTCTGTACCTCAACACTGCTCCCAACCCCCGTGATTCTCAAACTCTCTGGCAGGATGCTAAAAACCAGATGCAAAAGGAAGCTGACAGCTGGCCGTATGATTTTCCTCAATCAAAAGATTTCGTTCCACCAAATCAACGGGGAAAAGTGTCTGGACAATTACTCATCAGATGGTACGCTACTACAGGTGATGCGTCATTTAGCATTAGCAATGCTTACGTTGGCCTGGCCCTGCCAGGAGATGAAGGATCATGGCAAACAGAGAGCAAGGGTTATCAATTTTGGACCCAACCTGATAACAGCGGCTTCTTCACTGTACAAAATGTTGTGCCTGGGAACTACAACCTCTATGCCTGGGTCCCTGGCATTCTTGGAGATTACAAATATCAATTTGTCATTACCGTCACTCCAGGAGATGACATCCAGTTAGGTCCATTATATTATTGGCCTCCAAGAAATGGTCCTACCGTTTGGGAAATTGGGATTCCTGATCGATCAGCCCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTTGTTAACAAGTTATACTTAGGGAAGCCTGAACATAGGTTTAGACAATACGGCTTGTGGAAACGTTACGTTGAATTATATCCAACCAATGACCTCGTTTACACTGTTGGTGTTAGTGATTATTCCAAAGATTGGTTCTATGCTCAAGTTCCCAGGGACCTGGGAAATGGCACGTACATTTCAACAACATGGGAGATAAGATTTGAACTCCCATTTGTAGTCAGAGGAAGTTACGCACTACATATTTCCTTAGCGTCAGCCACAAATTCTCGCTTGATTGTTTCGTTCAATAAAGGTGCGAATCATCACCAGCGGTTCAACACAGGATTAAGAGGGGAGGACAATGCGGTAGCAAGGCACGGGATTCATGGATTGTGTTGGAGGTACAGCATGCAAGTACCAAGCTATTTGCTCGTGAGAGGAACCAACACCATTTACCTCACACAACCCAAAGCTAAATCGCCTTTTGAAGGAATTATGTATGACTATATCCGCTTTGAGAGTCCCTCGCTTTTTGGGTCTGGTAATAATAATTAA 2085 0.4432 MMKTIGVQVPKPPCFFLHCRVLMGVQLFFFFFFLLAGCSDITKSSVVRKVEGSHQSVTLQQSDDKVVMDNGIVSVTLTRPDGNLIGVSYNGIDNLLEPRNRPDNRGYWDFSWNPLGDRSSYYRFKGTTFSVIMENQDQAEVSFLYTWNSSLPAGNIPMNVDIRYILRRGSSGLYSYAILERSEDFPAIRVDVFRLVYKLSQDLFHYMAISDERQREMPTAKDRSNGQTLDYPEAVLLTHPSNSDFLGEVDDKYMYSVENRDNKVSGWVTFNSTNSSSVGFWMITPSNEFRNGGPTKQSLTCHVGPVTLNSFLSPHYAGKDMSMIFKQGESYTKVFGPTFLYLNTAPNPRDSQTLWQDAKNQMQKEADSWPYDFPQSKDFVPPNQRGKVSGQLLIRWYATTGDASFSISNAYVGLALPGDEGSWQTESKGYQFWTQPDNSGFFTVQNVVPGNYNLYAWVPGILGDYKYQFVITVTPGDDIQLGPLYYWPPRNGPTVWEIGIPDRSAQEFYVPDPYPNLVNKLYLGKPEHRFRQYGLWKRYVELYPTNDLVYTVGVSDYSKDWFYAQVPRDLGNGTYISTTWEIRFELPFVVRGSYALHISLASATNSRLIVSFNKGANHHQRFNTGLRGEDNAVARHGIHGLCWRYSMQVPSYLLVRGTNTIYLTQPKAKSPFEGIMYDYIRFESPSLFGSGNNN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1858 694 Pfam Rhamnogalacturonate lyase family 53 249 IPR010325 -
Prci5g1858 694 SUPERFAMILY Galactose-binding domain-like 491 683 IPR008979 -
Prci5g1858 694 CDD RGL4_C 496 683 - -
Prci5g1858 694 CDD RGL4_N 62 348 - -
Prci5g1858 694 SUPERFAMILY Galactose mutarotase-like 58 350 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci5g1858 694 Gene3D - 56 360 IPR014718 GO:0030246
Prci5g1858 694 Pfam Polysaccharide lyase family 4, domain II 409 480 IPR029413 -
Prci5g1858 694 Gene3D - 380 481 - -
Prci5g1858 694 CDD RGL4_M 384 484 IPR029413 -
Prci5g1858 694 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 686 - -
Prci5g1858 694 Pfam Polysaccharide lyase family 4, domain III 494 681 IPR029411 -
Prci5g1858 694 SUPERFAMILY Starch-binding domain-like 380 482 IPR013784 GO:0030246
Prci5g1858 694 Gene3D - 492 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1858 Prci-Chr5 36610095 36615713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1858 53 686 Polysaccharide Lyase AT1G09890 53.365 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1858 K18195 - gmx:100792575 825.083