Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1833 ATGGCTCGGGCTACTAACTGGCTATCGTTTTCGTTGTCGCCGATGGAAATGCTGAGGTCTACCAACTCGCAGTACCTTCAATATGACGGCGCTTCTGCTGCTCCTCACTACTTCATCGATAACTTCTATGCCAATGGGTGGTCGAACCCCAAGCCCCAGGTGCTGTACAGCCAAGTAGAGCTAGACGAAGGCAAAGAAAGTCAAGCTGCACAGAACATGGTTGAATCATCATTTCACCCAGGTTTCATGGAACCCCAGAATCATGACCAGCCAGTGCCGAAACTCGAGGATTTTCTGGGCGATTCTTCCTCGTCTATCATGCGTTACTCTGATAGCCAAACGGATACTCAAGATTCGTCGACCCTTACCCATATTTACGACCAGGGCTCGACCTACTTCAGTGACCAGCAAGATCTGAAGGCGATCGCCGGGTTCCAAGCTTTCTCCACCAACTCGGGCTCCGAAGTGGATGACTCGGCATCCATCGGCAAAACTCAGGCCGCCTCCGGCGAGTTTGCGGCTCACTCGTTAGAGTCATCCAGGCACGAGCTGGCTTTCTCAAGCGGCACCACCACTGGCACCTTGTCCCTCGGCGTCACCACCCCACGATGTGCCGATCAGAAAACCATTGTTCCTGTGGATTCCGATAGCTCCAAGAAGATAGCCGATACTTTTGGCCAAAGAACTTCGATTTACAGAGGTGTCACCAGACACCGATGGACTGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGAGAGAAGGTCAGGCGAGAAAAGGGCGTCAAGTCTATTTGGGTGGTTACGACAAAGAAGACAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCCACCACCAACTTCCCTGCTTCCAATTATGCAAAGGAAATGGAGGAGATGAAGCATGTAACAAAGCAGGAATTTATCGCGTCGCTGCGAAGGAAAAGTAGCGGATTTTCCCGGGGAGCTTCTATATATAGGGGCGTAACAAGGCATCACCAACAAGGTAGATGGCAAGCAAGAATTGGCCGTGTGGCAGGGAACAAGGATCTGTACCTTGGAACATTCGCCACTGAAGAAGAAGCAGCTGAGGCGTATGATATCGCGGCCATTAAGTTCAGGGGTGCGAACGCTGTGACCAACTTTGAGATGAGTAGGTATGACGTTGAAGCCATCATGAACAGTTCTCTTCCAATTGGTGGGGCAGCGAAACGCTTGAAGCTTTCGCTTGAATCCGAGCAGAAAGCAACTCTGAACAATAATAGCCAGCAAATCCAAAGTAACAGCATCAACTTCTCACCAATTCAGGCTGTCCCCTCCGTCCCTTGTGGAATTCCATTTGATCCTGCTGCTGCGTACTATCATCACAACCTCTTGAACCATTTTCGTCCTTCCAATGCCGGCGCCGCAGAATCTGCTGTATCTAATCCTTCTGCAACTCCATTTCCTGCCATGCCTGCACCTTCTGAGTTCTTCATATGGCCTCCTCATCAGTCATATTGA 1527 0.5043 MARATNWLSFSLSPMEMLRSTNSQYLQYDGASAAPHYFIDNFYANGWSNPKPQVLYSQVELDEGKESQAAQNMVESSFHPGFMEPQNHDQPVPKLEDFLGDSSSSIMRYSDSQTDTQDSSTLTHIYDQGSTYFSDQQDLKAIAGFQAFSTNSGSEVDDSASIGKTQAASGEFAAHSLESSRHELAFSSGTTTGTLSLGVTTPRCADQKTIVPVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPASNYAKEMEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAIMNSSLPIGGAAKRLKLSLESEQKATLNNNSQQIQSNSINFSPIQAVPSVPCGIPFDPAAAYYHHNLLNHFRPSNAGAAESAVSNPSATPFPAMPAPSEFFIWPPHQSY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1833 508 FunFam AP2-like ethylene-responsive transcription factor ANT 230 299 - -
Prci5g1833 508 SUPERFAMILY DNA-binding domain 230 299 IPR016177 GO:0003677
Prci5g1833 508 CDD AP2 332 393 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 Gene3D AP2/ERF domain 231 299 IPR036955 GO:0003700|GO:0006355
Prci5g1833 508 Gene3D AP2/ERF domain 333 393 IPR036955 GO:0003700|GO:0006355
Prci5g1833 508 CDD AP2 230 299 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 FunFam AP2-like ethylene-responsive transcription factor 332 393 - -
Prci5g1833 508 SUPERFAMILY DNA-binding domain 332 393 IPR016177 GO:0003677
Prci5g1833 508 ProSiteProfiles AP2/ERF domain profile. 231 297 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 PRINTS Ethylene responsive element binding protein signature 373 393 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 ProSiteProfiles AP2/ERF domain profile. 333 391 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 Pfam AP2 domain 333 383 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 Pfam AP2 domain 231 289 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 432 - -
Prci5g1833 508 SMART rav1_2 333 397 IPR001471 GO:0003700|GO:0006355
Prci5g1833 508 SMART rav1_2 231 303 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1833 Prci-Chr5 36475272 36480665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1833 47 508 AP2-EREBP Transcription Factor Family AT5G10510 58.684 5.52e-180 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci5g1833 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1833 K09285 - vvi:100854470 709.138