Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1820 ATGGCTCTTCCCGGTTCTCTGCAGCTGTCCCATGATTTCGGACATTGCAAGAACCTGGGCTGCTATAACCAACATACAGTACCGAGGATAATGTATAGAACCAAGTTACATTTATCAAGTGCAGCTCCCTTGTATCATGTTTCGTTTCTGAAGCAGGATTGCTGGAGAACTCAACTCTTTTGCAATATAAATAGCCCAGTACATTCCTTATTTTCCAAATCCCATGCTTTTAAGTGTCATTCTTTTCTAGGACAAGGCCCACGAAGTGAGCTACCTATTTTTAAGGGGGCAGCCACAGCACTGGCAAGGTCTTATAATCTATTACAATGTAGTCCTGTCACAGTAAAGTTGATTCCAGCCATTGGCACGATCATTTTTGCATTGTGGGGTGTGGCCCCATTAATTTACCACACAAGAAAACGGCTTCTTCAGAGGAGCGACAGTAGTTGGAAGAAAAGTAGCACACATTATGTAGTAACTTCTTACATTCAGCCATTACTGTTATGGACGGGAGCTATACTTATTTGCAGAGCCTTAGACCCATTAAATTTGCCTTCAGAAGCAGCTCAGGTTGTCAAGGAACGGCTTTTGAGTTTTGTACGGTCATTGTCAACTGTACTTGCCTTTGCCTATTGTTTATCATGTGTGATTCAACAAGCACAGAAATTCTTCATGGAGAGTGCAGCTAATGCCTGTGAGACAAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCTTCTCTTTGTTCATGGAGTTGCTGGGCTTTTCTACTCAGAGGTGGGTTACTGCAGGAGGTCTCGGGACTGTTTTGCTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGCAATAATTCATGCAACTCGGCCTTTTGTGGTGAATGAATGGATTCAAACTAAGGTCGAAGGATATGAAGTTTCTGGTACTGTGGAGCATGTTGGCTGGTGGTCACCGACAATTGTACGTGGTGAAAATCGTGAAGCTGTTTACATTCCAAATCACAAGTTCACAATGAACGTTGTGCGAAACCTCAGTCAGAAAACACATTGGCGCTTCAAGACCCACCTGGCTATTAGCCATATGGATGTTAATAAGATAAATAACATTGTTGCTGACATGAGAAAAGTCTTGGCCAAAAGTCCTCAAGTTGAGCAGCAGAAGCTGCACAGGAGAGTGTTTCTGGACAATATAGATCCTGAAAACCAGGCTCTTTTGATATTGGTGTCCTGTTTTGTCAAGACCTCACACCACGAAGAATTTTTGTGTGTTAAGGAAGCTTTACTATTGGATCTTCTTAGGGTTATTGGCCATCACCGTGCCCGACTTGCAACACCAGTTCGTACACTGCAGAAAATTTACAGTGATGCTGACTTGGAGAACATACCTTATGTGGGATCTGTATTTGGTGGTACTGGAACAGTATCAAACCGTCCAATAATTATAGAACCACCTTACAAAATCAAAGCAGATGATACGGCAAAAGGCCGATCAGCACGCCCATCCAACGAAGGAGATAACAAGACAGCTGCGCAAACCAAGGTTGGACCAACGGCGCCAGATTCTAAGGTCAGAGAAGCTCATTCTGACTCCAAGGTAGACGTTGAAGCTGTGATATCTAATTCTGATGCAACCGGAAACTCGAAGGTTGCCTTCACATCCAAACCTGATCCCCAAGTGGGTGAAAATGAGCCAATTAAAATGGAGCCTGATAGCTTCTTAAAGGAAAACCTGGAGGCGCCACATATGTCTGCATCCAACTCCAAAGCAACTGGAGCTGCAGTAAATAACATGACCGAGAGGAATCCTGATGTCATACCATCAAAGAATTCTGTCAAAGGAGGTGGACGTCCTAAGAGCATGCCAACAAAACAGCAAGATGAAATGAAATCAACTGGCCAGTCTCATACATCTAGGCCTGCCCTTGAAGAGAATATAGTACTTGGGGTAGCATTGGAGGGATCAAAGAGAACCCTTCCGATTGAGGAGGGAATGAATTCATCTACTGCACGAGAGGTAAAAGAAATGGCTGCCCAGGGTGGAAATAGATCCCTGGCAGCTGAGAATGGGAAAGATAAGTGA 2115 0.4374 MALPGSLQLSHDFGHCKNLGCYNQHTVPRIMYRTKLHLSSAAPLYHVSFLKQDCWRTQLFCNINSPVHSLFSKSHAFKCHSFLGQGPRSELPIFKGAATALARSYNLLQCSPVTVKLIPAIGTIIFALWGVAPLIYHTRKRLLQRSDSSWKKSSTHYVVTSYIQPLLLWTGAILICRALDPLNLPSEAAQVVKERLLSFVRSLSTVLAFAYCLSCVIQQAQKFFMESAANACETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQRWVTAGGLGTVLLTLAGREIFTNFLSSAIIHATRPFVVNEWIQTKVEGYEVSGTVEHVGWWSPTIVRGENREAVYIPNHKFTMNVVRNLSQKTHWRFKTHLAISHMDVNKINNIVADMRKVLAKSPQVEQQKLHRRVFLDNIDPENQALLILVSCFVKTSHHEEFLCVKEALLLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPYVGSVFGGTGTVSNRPIIIEPPYKIKADDTAKGRSARPSNEGDNKTAAQTKVGPTAPDSKVREAHSDSKVDVEAVISNSDATGNSKVAFTSKPDPQVGENEPIKMEPDSFLKENLEAPHMSASNSKATGAAVNNMTERNPDVIPSKNSVKGGGRPKSMPTKQQDEMKSTGQSHTSRPALEENIVLGVALEGSKRTLPIEEGMNSSTAREVKEMAAQGGNRSLAAENGKDK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1820 704 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 690 IPR045042 -
Prci5g1820 704 MobiDBLite consensus disorder prediction 636 652 - -
Prci5g1820 704 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
Prci5g1820 704 MobiDBLite consensus disorder prediction 595 617 - -
Prci5g1820 704 Pfam Mechanosensitive ion channel 244 448 IPR006685 GO:0016020|GO:0055085
Prci5g1820 704 MobiDBLite consensus disorder prediction 595 654 - -
Prci5g1820 704 MobiDBLite consensus disorder prediction 502 544 - -
Prci5g1820 704 Gene3D - 196 301 - -
Prci5g1820 704 MobiDBLite consensus disorder prediction 557 576 - -
Prci5g1820 704 Gene3D - 303 358 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1820 Prci-Chr5 36394406 36403872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1820 9 699 Mechanosensitive Ion Channel Family AT5G10490 54.220 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1820 K22047 - gmx:100789444 939.488