Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1805 ATGCTTTTTAGTTTTTACCTCTTTTTATCGCTGCATATGCAATCTGCTGCAGAAAAAAAATTCAAATTCGATTCAATGGTCTTACTTCGGAAGGGAATGCAGATTCAAAATTACTATAACTCAGAAGCATTCAAGTCAAGAAGCAGCTTTTCTCAAGGAACCATCTCGGAGACAAACAGAAACTCGTTCTTGATACCAAAATCAAAGGCAGAGATCAAATTACTCGCAGCTAAAAAACACAGCGAAGCAGAGAAGAGACGCAGGATGCGAATCAATGGCCAATATGCCACCCTTCGCACCATCCTCCCCAACTTGGTGAAAGTGGACAAGGCATCGGTACTGGCTGAGACTATAAGGCAGGTAAAGGAGCTGAAGAAGAATGTATCCGAATTGGAAGCAATTAGTGCTAATAGTTCAGGTGAGATCACAGTGTTTCCCAGTGAAGTAGACAAGTTGAAATTGGAACACTGTAAAGATGAGGAGGGTCTTATGAAGGCGACCTTGAGTTGTGAGGATAGGCCAGGGTTGATGTCAGCCATGACAAGGGCTCTTAAGTCTTTGAGAGCCAAGGTGGTAAAGGCTGAGATGGTGAATGTAGGAGGGAGAATCAGAGAAGTGTTATGGGTTCAGGGCTTGGAAAATGGAAATGAAGGGATGGGTGTCCTGAAGAGGACTCTGAAGGTTGTCATGCACAAGCCAACTCTCAAGATGCATCGTCTGACTCGCACAGGATAA 735 0.4395 MLFSFYLFLSLHMQSAAEKKFKFDSMVLLRKGMQIQNYYNSEAFKSRSSFSQGTISETNRNSFLIPKSKAEIKLLAAKKHSEAEKRRRMRINGQYATLRTILPNLVKVDKASVLAETIRQVKELKKNVSELEAISANSSGEITVFPSEVDKLKLEHCKDEEGLMKATLSCEDRPGLMSAMTRALKSLRAKVVKAEMVNVGGRIREVLWVQGLENGNEGMGVLKRTLKVVMHKPTLKMHRLTRTG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1805 244 PANTHER TRANSCRIPTION FACTOR BHLH30 49 234 IPR045847 GO:0003700|GO:0006355
Prci5g1805 244 SMART finulus 81 130 IPR011598 GO:0046983
Prci5g1805 244 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Prci5g1805 244 Gene3D - 164 240 - -
Prci5g1805 244 Coils Coil 114 141 - -
Prci5g1805 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Prci5g1805 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 142 IPR036638 GO:0046983
Prci5g1805 244 Gene3D - 75 134 IPR036638 GO:0046983
Prci5g1805 244 SUPERFAMILY ACT-like 167 233 IPR045865 -
Prci5g1805 244 CDD ACT_UUR-ACR-like 167 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1805 Prci-Chr5 36277011 36280114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1805 74 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.103 1.09e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1805 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1805 - - pcin:129311482 471.085