Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1804 ATGCAGCCTACAAGACTAGCAAACATTGGAATGCAGATTCAAAATTACTATAACTCAGAAGCATTCAAGTCAAGAAGCAGCTTTTCTCAAGGAACCATCTCGGAGACAAACAGAAACTCGTTCTTGATACCAAAATCAAAGGCAGAGATCAAATTACTCGCAGCTAAAAAACACAGCGAAGCAGAGAAGAGACGCAGGATGCGAATCAATGGCCAATATGCCACCCTTCGCACCATCCTCCCCAACTTGGTGAAAGTGGACAAGGCATCGGTACTGGCTGAGACTATAAGGCAGGTAAAGGAGCTGAAGAAGAATGTATCCGAATTGGAAGCAATTAGTGCTAATAGTTCAGGTGAGATCACAGTGTTTCCCAGTGAAGTAGACAAGTTGAAATTGGAACACTGTAAAGATGAGGAGGGTCTTATGAAGGCGACCTTGAGTTGTGAGGATAGGCCAGGGTTGATGTCAGCCATGACAAGGGCTCTTAAGTCTTTGAGAGCCAAGGTGGTAAAGGCTGAGATGGTGAATGTAGGAGGGAGAATCAGAGAAGTGTTATGGGTTCAGGGCTTGGAAAATGGAAATGAAGGGATGGGTGTCCTGAAGAGGACTCTGAAGGTTGTCATGCACAAGCCAACTCTCAAGATGCATCGTCTGACTCGCACAGGATAA 669 0.4529 MQPTRLANIGMQIQNYYNSEAFKSRSSFSQGTISETNRNSFLIPKSKAEIKLLAAKKHSEAEKRRRMRINGQYATLRTILPNLVKVDKASVLAETIRQVKELKKNVSELEAISANSSGEITVFPSEVDKLKLEHCKDEEGLMKATLSCEDRPGLMSAMTRALKSLRAKVVKAEMVNVGGRIREVLWVQGLENGNEGMGVLKRTLKVVMHKPTLKMHRLTRTG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1804 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Prci5g1804 222 SUPERFAMILY ACT-like 145 211 IPR045865 -
Prci5g1804 222 Coils Coil 92 119 - -
Prci5g1804 222 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Prci5g1804 222 SMART finulus 59 108 IPR011598 GO:0046983
Prci5g1804 222 PANTHER TRANSCRIPTION FACTOR BHLH30 35 212 IPR045847 GO:0003700|GO:0006355
Prci5g1804 222 Gene3D - 142 218 - -
Prci5g1804 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 120 IPR036638 GO:0046983
Prci5g1804 222 CDD ACT_UUR-ACR-like 145 192 - -
Prci5g1804 222 Gene3D - 53 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1804 Prci-Chr5 36277011 36280114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1804 52 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.118 7.54e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1804 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1804 - - pcin:129311482 412.149