Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1803 ATGCAGATTCAAAATTACTATAACTCAGAAGCATTCAAGTCAAGAAGCAGCTTTTCTCAAGGAACCATCTCGGAGACAAACAGAAACTCGTTCTTGATACCAAAATCAAAGGCAGAGATCAAATTACTCGCAGCTAAAAAACACAGCGAAGCAGAGAAGAGACGCAGGATGCGAATCAATGGCCAATATGCCACCCTTCGCACCATCCTCCCCAACTTGGTGAAAGTGGACAAGGCATCGGTACTGGCTGAGACTATAAGGCAGGTAAAGGAGCTGAAGAAGAATGTATCCGAATTGGAAGCAATTAGTGCTAATAGTTCAGGTGAGATCACAGTGTTTCCCAGTGAAGTAGACAAGTTGAAATTGGAACACTGTAAAGATGAGGAGGGTCTTATGAAGGCGACCTTGAGTTGTGAGGATAGGCCAGGGTTGATGTCAGCCATGACAAGGGCTCTTAAGTCTTTGAGAGCCAAGGTGGTAAAGGCTGAGATGGTGAATGTAGGAGGGAGAATCAGAGAAGTGTTATGGGTTCAGGGCTTGGAAAATGGAAATGAAGGGATGGGTGTCCTGAAGAGGACTCTGAAGGTTGTCATGCACAAGCCAACTCTCAAGATGCATCGTCTGACTCGCACAGGATAA 639 0.4538 MQIQNYYNSEAFKSRSSFSQGTISETNRNSFLIPKSKAEIKLLAAKKHSEAEKRRRMRINGQYATLRTILPNLVKVDKASVLAETIRQVKELKKNVSELEAISANSSGEITVFPSEVDKLKLEHCKDEEGLMKATLSCEDRPGLMSAMTRALKSLRAKVVKAEMVNVGGRIREVLWVQGLENGNEGMGVLKRTLKVVMHKPTLKMHRLTRTG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1803 212 Gene3D - 132 208 - -
Prci5g1803 212 PANTHER TRANSCRIPTION FACTOR BHLH30 29 202 IPR045847 GO:0003700|GO:0006355
Prci5g1803 212 Coils Coil 82 109 - -
Prci5g1803 212 Gene3D - 43 102 IPR036638 GO:0046983
Prci5g1803 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Prci5g1803 212 SUPERFAMILY ACT-like 135 201 IPR045865 -
Prci5g1803 212 CDD ACT_UUR-ACR-like 135 182 - -
Prci5g1803 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 110 IPR036638 GO:0046983
Prci5g1803 212 SMART finulus 49 98 IPR011598 GO:0046983
Prci5g1803 212 Pfam Helix-loop-helix DNA-binding domain 47 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1803 Prci-Chr5 36277011 36281199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1803 42 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.118 7.28e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1803 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1803 - - pcin:129311482 409.838