Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1794 ATGGATTTCGAGGATCAAGAAGAGCAAGAAGAAGAGATGGGCATGGAGTCACTGGGGATATCTCCGCGAGTGAAAATGCCGAGCTCTGCGGGTGCAGGAGAAGCTATGGTGTTGCCTCAACCCGCAAGGAACTATTATAACAGTAATAGCAAGGGAAGGTACAGAGAGTGCTTGAAGAACCACGCGGTGAGTCTCGGCGGACACGCGCTAGACGGCTGTGGGGAGTTCATGCCGGCCGGAGCCGAAGGCACACTCGACGCTCTCAAGTGCGCCGCCTGTAACTGTCACCGTAATTTCCACCGCAAAGAGACCGAACCATTTTTGTTAACCCCGCATCAACACCACCAGCCGCCGCAGTTCGCTGCAGCATATTACCGAGCGCCGGCGGGGTACTTACACGTGGCTGGGCACCACAGGGGAGGGCCAACGACCCTGGCGTTGCCGTCTACATCGGGAGGGGGTGGAACGCAGAGCACGAGAGATGACCAAGACGACGACGCTTCGAACCCGAGCGGTGGAGGAGGAGGATCTTCGAAGAAGAGGTTCAGGACCAAGTTCACGCAGGAACAGAAGGATAAAATGCTGGGACTTGCAGAGAGATTGGGATGGCGGATTCAGAAGCAAGACGAGGAACTGGTCCAGCAATTCTGTGACGAAGTTGGAGTGAAGCGTCAGGTTCTTAAGGTTTGGATGCACAACAACAAGCACACTGTGGGTAAGAAGCCCTAG 729 0.5556 MDFEDQEEQEEEMGMESLGISPRVKMPSSAGAGEAMVLPQPARNYYNSNSKGRYRECLKNHAVSLGGHALDGCGEFMPAGAEGTLDALKCAACNCHRNFHRKETEPFLLTPHQHHQPPQFAAAYYRAPAGYLHVAGHHRGGPTTLALPSTSGGGGTQSTRDDQDDDASNPSGGGGGSSKKRFRTKFTQEQKDKMLGLAERLGWRIQKQDEELVQQFCDEVGVKRQVLKVWMHNNKHTVGKKP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1794 242 MobiDBLite consensus disorder prediction 144 158 - -
Prci5g1794 242 FunFam Zinc-finger homeodomain protein 2 166 240 - -
Prci5g1794 242 SUPERFAMILY Homeodomain-like 168 240 IPR009057 -
Prci5g1794 242 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Prci5g1794 242 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 237 - -
Prci5g1794 242 MobiDBLite consensus disorder prediction 1 23 - -
Prci5g1794 242 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Prci5g1794 242 Gene3D - 164 239 - -
Prci5g1794 242 Pfam ZF-HD protein dimerisation region 53 104 IPR006456 -
Prci5g1794 242 NCBIfam homeobox domain, ZF-HD class 179 235 IPR006455 -
Prci5g1794 242 MobiDBLite consensus disorder prediction 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1794 Prci-Chr5 36215430 36216871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1794 1 238 ZF-HD Transcription Factor Family AT4G24660 49.174 9.04e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci5g1794 ZF-HD_dimer 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1794 - - qsa:O6P43_033224 293.893