Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1785 ATGGAAGAAGCTCTCAGGAGGCTAAACGGGTTAGCCCCGAATCCAGAACCCGACTCACAGGATCCCATGTCCGATCACCCGAAGAAGTGCTCGGCCACCACCAAGAGGACGGTCAGAGAAAACGGCGGCACAATGAGGTACCGCGGAGTGCGGCGTCGGCCATGGGGCCGTTACGCGGCGGAGATAAGAGATCCTCAGTCCAAAGAGCGACGGTGGCTCGGCACTTTCGACACGGCGGAGGAAGCTGCATGCGCCTATGACTGCGCCGCCCGAGCCATGCGTGGCCTCAAAGCTCGCACCAATTTCGTTTACCCGACTTCACCGCCTCCCTCGGCGACCACCGAACATTTCTTCCCTCATTTCGTCTTCGCCAAACAATCTCACAATCAAATGAACAAGAACCTTAGCCCTCATAACCGCCCTTTCGGGTGGTCTTCTTCTAGCTCTAACTCTCACGTCGCCGACTTCCCATCTCCTGCAAATTCTTCTCTCAACATGTTTCTCTTTCGTGACTACCTTGACTCTGCTTCAAACCCATCTTTGGTTACTTCTGCTGATCAGCAATTTTACAACCCCGTGACCAAGGTCATATGTTCATGTTCCGGTGCCTCTTCTACATCTTTACCCCCGTGTAGCTCTGTCCTAGATTGCTGTGTCGTGAATTCTGCCGGTGGAGATGTGGAGAATACCAAAATTGCTGAAGCAGCCAATGAAGATTTTGAATTCTTTCCCAGAGAGCCTTCGGACTCCGGATTGTTGGAAGAGATTGTCCATAGGTTCTTACCAAAATCAAAGCCCAACCAGCAGCCGGAGGATCGAGTGAAAGAGGACACTCTCTCTCTGTCCACACCACAGTTGGTTCCTTCTCAGCCAGCTTATGATCGTGGCATGTTTACTCCCACCGCTTCTCTGAACCATGAAAGTCTGAGGAATAAGGAGGTGACCAAGGCTGAGGATTATAATGCTTCTTCTGATCAGCAAGGTTATTACATCATGCCGCAATTTGACAGCTTTCAGAATGGGTACAACACTGGACAAGGCTTGCCTCTCCACTTGATGATGAAAGATGCAGGGTACTCCATCATGGAAGATATTTTCCAGTACCCAGAACTGCTTAATTAA 1122 0.5071 MEEALRRLNGLAPNPEPDSQDPMSDHPKKCSATTKRTVRENGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPPSATTEHFFPHFVFAKQSHNQMNKNLSPHNRPFGWSSSSSNSHVADFPSPANSSLNMFLFRDYLDSASNPSLVTSADQQFYNPVTKVICSCSGASSTSLPPCSSVLDCCVVNSAGGDVENTKIAEAANEDFEFFPREPSDSGLLEEIVHRFLPKSKPNQQPEDRVKEDTLSLSTPQLVPSQPAYDRGMFTPTASLNHESLRNKEVTKAEDYNASSDQQGYYIMPQFDSFQNGYNTGQGLPLHLMMKDAGYSIMEDIFQYPELLN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1785 373 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Prci5g1785 373 MobiDBLite consensus disorder prediction 21 46 - -
Prci5g1785 373 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Prci5g1785 373 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Prci5g1785 373 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Prci5g1785 373 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Prci5g1785 373 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Prci5g1785 373 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 248 - -
Prci5g1785 373 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Prci5g1785 373 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Prci5g1785 373 MobiDBLite consensus disorder prediction 1 46 - -
Prci5g1785 373 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1785 Prci-Chr5 36128455 36129777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1785 44 263 AP2-EREBP Transcription Factor Family AT1G24590 46.818 8.23e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci5g1785 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1785 - - gmx:102669715 286.96