Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1780 ATGGAAATGCTCTCCTTCTACTCTACTTTAGCTCAAGTCGGGATACGAGGCTGCTGTTTTGGAATTGCAAATATGATACTGGTAAAGAGAATGAGAGAAACATTATACTCCTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGTAACAGTTGGTGATCTGACAAGTAGGCTAGGTGCCGATTGTCAACAAGTTTCACGTGTTATTGGAAATGACCTTAACTTGATATTGCGCAATGTTCTTCAGGGAGCTGGTGCTTTAACCTACTTGTTATTTTTGTCTTGGCCACTTGGTTTATTTACATTGATGATATGCTCTGTATTGTCAGCAGTTTTGCTACTTTATGGAAGGTACCAGAAAAAGGCAGCAAAGTTGATCCAAGAAGTCACTGCTTCTGCTAATGAAGTTGCACAAGAGACATTCTCTCTCATTAGAACTGTCCGCGTTTATGGAACAGAAGAGGAAGAACTTGGAAGGTATAAATGGTGGCTCGAAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCTTATGGATTTTGGAATTTCAGCTTCAACAATCTTTATCATTCAACTCAGGTTATTGCGGTGCTGTTTGGAGGAATGTCTATTCTAGCAGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTGGGAGACAGTATATCATCTTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTGTTCCAGTTGATGGATCTCTCACCTAGCAAGCAGTTCCAAGCGAAAGGAGCAAAGTTGCAGAGGTTAATTGGGAATATTGAATTTGTTAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGCAGCATGTAAGTTTTGCTGTTCGACCTGGTGAAGTGGTTGCAATAGCTGGTCTTAGTGGCAGTGGAAAGAGTACACTAGTGAACCTTCTGCTCCGCTTATATGAGCCAACCAATGGTCAGATTTTGATTGATGGCGCCCCTCTTAAAGAGCTGGACATCACTTGGTGGAGAGAAAGAATCGGATTTGTGGGACAGGAACCTAAGCTCTTCAGAATGGATATCAATTCAAACATAAGATATGGATGCACTCGGGAGATTAAGCAAGAGGATGTTGAATGGGCTGCAAAGCAAGCATATGCCCATGACTTCATCTCAGCACTTCCTAATGGGTATGAAACACTTGTTGACGATGATTTGTTGAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTCTCAGGGATCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGCGTTCTCCGTTCTGTTAAAAATGACTCCCTGACTATGAGAAGTGTCATTGTTATTGCGCACAGGCTTTCTACTATACAAGCAGCCGACAGGGTTGTGGTAATGGATAGTGGTAAAATTGTTGAGATTGGGAGTCACAGGGAACTACTCTTAAGGGACGGTTTGTATGCACGATTGACTAGTAAACAGGCTGACGCAGTGGCTTGA 1563 0.4171 MEMLSFYSTLAQVGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNVTVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGAGALTYLLFLSWPLGLFTLMICSVLSAVLLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVYGTEEEELGRYKWWLEKLADISLRQSAAYGFWNFSFNNLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDSISSLMQSVGASEKVFQLMDLSPSKQFQAKGAKLQRLIGNIEFVNVSFHYPSRPTVSVVQHVSFAVRPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGAPLKELDITWWRERIGFVGQEPKLFRMDINSNIRYGCTREIKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVKNDSLTMRSVIVIAHRLSTIQAADRVVVMDSGKIVEIGSHRELLLRDGLYARLTSKQADAVA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1780 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 515 IPR027417 -
Prci5g1780 520 CDD ABC_6TM_TAP 14 249 - -
Prci5g1780 520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 15 241 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci5g1780 520 Pfam ABC transporter 294 441 IPR003439 GO:0005524
Prci5g1780 520 Gene3D ABC transporter type 1, transmembrane domain 17 272 IPR036640 GO:0005524|GO:0016020
Prci5g1780 520 SUPERFAMILY ABC transporter transmembrane region 14 255 IPR036640 GO:0005524|GO:0016020
Prci5g1780 520 Gene3D - 273 516 IPR027417 -
Prci5g1780 520 SMART AAA_5 302 491 IPR003593 GO:0016887
Prci5g1780 520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 275 514 IPR003439 GO:0005524
Prci5g1780 520 PANTHER ABC TRANSPORTER B FAMILY 4 512 IPR039421 -
Prci5g1780 520 ProSitePatterns ABC transporters family signature. 413 427 IPR017871 GO:0005524|GO:0016887
Prci5g1780 520 Pfam ABC transporter transmembrane region 15 226 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci5g1780 520 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 273 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1780 Prci-Chr5 36054308 36060803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1780 30 518 Calmodulin-binding Proteins AT2G36910 33.735 1.16e-72 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1780 - - pcin:129311051 991.49