Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1778 ATGGTTCAGTTTCCTTCCTTCTATTTTGCCTGGTGGAAGCTGGTGGGACTTCTCCGAAAATGTCGAAATTCAAGAATCAGCTCGACCCGTCACCGTGTGGCGCGCGCTTGCCAAAATGTGGCAACTTGTTGCTCAAGACCGATGGGTTATTTTCGCTGCATTCTCTGCTCTGATTCTTGCGGCGGTTTCGGAGATTTCCATACCGCATTTCTTAACTGCATCTATCTTTTCCGCACAGGGTGCGGAAATTACAGTTTTCCGTCGGAATGTACTTCTCTTGGTTCTGTTCTGTATAACTTCGGGAATATGCAGGTCAAAATCTTCGGGATACGAGGCTGCTGTTTTGGAATTGCAAATATGATACTGGTAAAGAGAATGAGAGAAACATTATACTCCTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGTAACAGTTGGTGATCTGACAAGTAGGCTAGGTGCCGATTGTCAACAAGTTTCACGTGTTATTGGAAATGACCTTAACTTGATATTGCGCAATGTTCTTCAGGGAGCTGGTGCTTTAACCTACTTGTTATTTTTGTCTTGGCCACTTGGTTTATTTACATTGATGATATGCTCTGTATTGTCAGCAGTTTTGCTACTTTATGGAAGGTACCAGAAAAAGGCAGCAAAGTTGATCCAAGAAGTCACTGCTTCTGCTAATGAAGTTGCACAAGAGACATTCTCTCTCATTAGAACTGTCCGCGTTTATGGAACAGAAGAGGAAGAACTTGGAAGGTATAAATGGTGGCTCGAAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCTTATGGATTTTGGAATTTCAGCTTCAACAATCTTTATCATTCAACTCAGGTTATTGCGGTGCTGTTTGGAGGAATGTCTATTCTAGCAGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTGGGAGACAGTATATCATCTTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTGTTCCAGTTGATGGATCTCTCACCTAGCAAGCAGTTCCAAGCGAAAGGAGCAAAGTTGCAGAGGTTAATTGGGAATATTGAATTTGTTAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGCAGCATGTAAGTTTTGCTGTTCGACCTGGTGAAGTGGTTGCAATAGCTGGTCTTAGTGGCAGTGGAAAGAGTACACTAGTGAACCTTCTGCTCCGCTTATATGAGCCAACCAATGGTCAGATTTTGATTGATGGCGCCCCTCTTAAAGAGCTGGACATCACTTGGTGGAGAGAAAGAATCGGATTTGTGGGACAGGAACCTAAGCTCTTCAGAATGGATATCAATTCAAACATAAGATATGGATGCACTCGGGAGATTAAGCAAGAGGATGTTGAATGGGCTGCAAAGCAAGCATATGCCCATGACTTCATCTCAGCACTTCCTAATGGGTATGAAACACTTGTTGACGATGATTTGTTGAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTCTCAGGGATCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGCGTTCTCCGTTCTGTTAAAAATGACTCCCTGACTATGAGAAGTGTCATTGTTATTGCGCACAGGCTTTCTACTATACAAGCAGCCGACAGGGTTGTGGTAATGGATAGTGGTAAAATTGTTGAGATTGGGAGTCACAGGGAACTACTCTTAAGGGACGGTTTGTATGCACGATTGACTAGTAAACAGGCTGACGCAGTGGCTTGA 1848 0.4264 MVQFPSFYFAWWKLVGLLRKCRNSRISSTRHRVARACQNVATCCSRPMGYFRCILCSDSCGGFGDFHTAFLNCIYLFRTGCGNYSFPSECTSLGSVLYNFGNMQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNVTVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGAGALTYLLFLSWPLGLFTLMICSVLSAVLLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVYGTEEEELGRYKWWLEKLADISLRQSAAYGFWNFSFNNLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDSISSLMQSVGASEKVFQLMDLSPSKQFQAKGAKLQRLIGNIEFVNVSFHYPSRPTVSVVQHVSFAVRPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGAPLKELDITWWRERIGFVGQEPKLFRMDINSNIRYGCTREIKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVKNDSLTMRSVIVIAHRLSTIQAADRVVVMDSGKIVEIGSHRELLLRDGLYARLTSKQADAVA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1778 615 Pfam ABC transporter transmembrane region 104 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci5g1778 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 610 IPR027417 -
Prci5g1778 615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 609 IPR003439 GO:0005524
Prci5g1778 615 FunFam Multidrug ABC transporter ATP-binding protein 362 614 - -
Prci5g1778 615 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Prci5g1778 615 PANTHER ABC TRANSPORTER B FAMILY 100 606 IPR039421 -
Prci5g1778 615 Pfam ABC transporter 389 536 IPR003439 GO:0005524
Prci5g1778 615 SMART AAA_5 397 586 IPR003593 GO:0016887
Prci5g1778 615 Gene3D - 368 611 IPR027417 -
Prci5g1778 615 CDD ABC_6TM_TAP 109 344 - -
Prci5g1778 615 Gene3D ABC transporter type 1, transmembrane domain 112 367 IPR036640 GO:0005524|GO:0016020
Prci5g1778 615 SUPERFAMILY ABC transporter transmembrane region 108 350 IPR036640 GO:0005524|GO:0016020
Prci5g1778 615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1778 Prci-Chr5 36053346 36060803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1778 125 613 Calmodulin-binding Proteins AT2G36910 33.735 8.99e-72 249