Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1756 ATGGAAGAAATCTACGGAGTGCCGATGTCGGCGGACTACTCCGACAAGGCCTTGATGACGCCGGAGAACCTCATATTCGCCACCGATTACCAGAGTTTTCTCCCGTCCTCCTCCGGCGGCTTCCATGATCGGAATCCGATGTTCGGATCTAACGACCTGCTTTCTGCCATTTCCGAAGCTGAGCCGCCGTCTGTCGCCCCTGAAATTCAACCTGAAGACAGTGCCTCCTCTCTCATCAAAGCCAAAATCGCTTCTCATCCTCACTACCCTCGTCTCCTCCATGCTTTCATCGACTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGCCTGTTAGACGAAATCCAGCGGGAAAACGATGTCTGTAAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGACCTGCTGATGAAGTATAAGTCTGATCTTTCCCGGCCGTTTGACGAAGCAACTACTTTCCTCAACGAGATCGAAATCCAGCTCAGCCATCTCTGCTCTGGTGCTCCCGTTCCAACTCTTTCCGATGAAGGAGGCGTGTCTTCAGAGGAAGATGTAAGTGTAGGAGATAGGGATGCACGAGACGGTCGATTGCGGGGGGAAGACCGGGAGCTGAAGGACAGGCTTTTAAACAAGTTTGGTAGCCGTATTAGCAGTTTGAAATTAGAGTTCTCGAAGAAGAAGAAGAAGGGCAAGCTCCCTAAAGAGGCTAGGCAAACGCTTCTTGACTGGTGGAATGTTCACTATAAATGGCCTTACCCTACGGAAGCTGATAAGATAGCACTGGCAAAGACGACGGGGCTGGATCAGAAGCAAATAAACAATTGGTTTATTAATCAAAGGAAGCGTCATTGGAGACCTTCGGAGAACCTGCAGTTCTCTGTCACGGATACTCTAACCGGAGGATTCTACTCGGATCATGTATGA 960 0.5073 MEEIYGVPMSADYSDKALMTPENLIFATDYQSFLPSSSGGFHDRNPMFGSNDLLSAISEAEPPSVAPEIQPEDSASSLIKAKIASHPHYPRLLHAFIDCQKVGAPPEIACLLDEIQRENDVCKREVVSTCFGDDPELDEFMETYCDLLMKYKSDLSRPFDEATTFLNEIEIQLSHLCSGAPVPTLSDEGGVSSEEDVSVGDRDARDGRLRGEDRELKDRLLNKFGSRISSLKLEFSKKKKKGKLPKEARQTLLDWWNVHYKWPYPTEADKIALAKTTGLDQKQINNWFINQRKRHWRPSENLQFSVTDTLTGGFYSDHV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1756 319 SMART HOX_1 237 302 IPR001356 GO:0003677
Prci5g1756 319 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Prci5g1756 319 CDD homeodomain 247 299 IPR001356 GO:0003677
Prci5g1756 319 Pfam ELK domain 215 236 IPR005539 GO:0003677
Prci5g1756 319 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Prci5g1756 319 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Prci5g1756 319 SUPERFAMILY Homeodomain-like 236 309 IPR009057 -
Prci5g1756 319 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Prci5g1756 319 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Prci5g1756 319 Gene3D - 233 305 - -
Prci5g1756 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 303 - -
Prci5g1756 319 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Prci5g1756 319 SMART ELK_2 215 236 IPR005539 GO:0003677
Prci5g1756 319 MobiDBLite consensus disorder prediction 184 208 - -
Prci5g1756 319 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Prci5g1756 319 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1756 Prci-Chr5 35871193 35878891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1756 1 317 Homeobox Transcription Factor Family AT1G23380 65.046 4.87e-143 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci5g1756 KNOX2 9.1e-24 No_clan