Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1753 ATGGAAGAAATCTACGGAGTGCCGATGTCGGCGGACTACTCCGACAAGGCCTTGATGACGCCGGAGAACCTCATATTCGCCACCGATTACCAGAGTTTTCTCCCGTCCTCCTCCGGCGGCTTCCATGATCGGAATCCGATGTTCGGATCTAACGACCTGCTTTCTGCCATTTCCGAAGCTGAGCCGCCGTCTGTCGCCCCTGAAATTCAACCTGAAGACAGTGCCTCCTCTCTCATCAAAGCCAAAATCGCTTCTCATCCTCACTACCCTCGTCTCCTCCATGCTTTCATCGACTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGCCTGTTAGACGAAATCCAGCGGGAAAACGATGTCTGTAAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGACCTGCTGATGAAGTATAAGTCTGATCTTTCCCGGCCGTTTGACGAAGCAACTACTTTCCTCAACGAGATCGAAATCCAGCTCAGCCATCTCTGCTCTGGTGCTCCCGTTCCAACTCTTTCCGATGAAGGAGGCGTGTCTTCAGAGGAAGATGTAAGTGTAGGAGATAGGGGTGCACGAGACGGTCGATTGCGGGGGGAAGACCGGGAGCTGAAGGACAGGCTTTTAAACAAGTTTGGTAGCCGTATTAGCAGTTTGAAATTAGAGTTCTCGAAGAAGAAGAAGAAGGGCAAGCTCCCTAAAGAGGCTAGGCAAACGCTTCTTGACTGGTGGAATGTTCACTATAAATGGCCTTACCCTACGGAAGCTGATAAGATAGCACTGGCAAAGACGACGGGGCTGGATCAGAAGCAAATAAACAATTGGTTTATTAATCAAAGGAAGCGTCATTGGAGACCTTCGGAGAACCTGCAGTTCTCTGTCACGGATACTCTAACCGGAGGATTCTACTCGGATCATGTATGA 960 0.5083 MEEIYGVPMSADYSDKALMTPENLIFATDYQSFLPSSSGGFHDRNPMFGSNDLLSAISEAEPPSVAPEIQPEDSASSLIKAKIASHPHYPRLLHAFIDCQKVGAPPEIACLLDEIQRENDVCKREVVSTCFGDDPELDEFMETYCDLLMKYKSDLSRPFDEATTFLNEIEIQLSHLCSGAPVPTLSDEGGVSSEEDVSVGDRGXARDGRLRGEDRELKDRLLNKFGSRISSLKLEFSKKKKKGKLPKEARQTLLDWWNVHYKWPYPTEADKIALAKTTGLDQKQINNWFINQRKRHWRPSENLQFSVTDTLTGGFYSDHV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1753 320 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Prci5g1753 320 SMART HOX_1 238 303 IPR001356 GO:0003677
Prci5g1753 320 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Prci5g1753 320 SMART ELK_2 216 237 IPR005539 GO:0003677
Prci5g1753 320 Gene3D - 234 306 - -
Prci5g1753 320 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Prci5g1753 320 SUPERFAMILY Homeodomain-like 237 310 IPR009057 -
Prci5g1753 320 CDD homeodomain 248 300 IPR001356 GO:0003677
Prci5g1753 320 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Prci5g1753 320 MobiDBLite consensus disorder prediction 184 210 - -
Prci5g1753 320 Pfam ELK domain 216 237 IPR005539 GO:0003677
Prci5g1753 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 304 - -
Prci5g1753 320 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Prci5g1753 320 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Prci5g1753 320 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Prci5g1753 320 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1753 Prci-Chr5 35852768 35860511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1753 1 318 Homeobox Transcription Factor Family AT1G23380 65.046 3.29e-144 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci5g1753 KNOX2 9.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1753 - - gmx:100803730 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1638 10 12013271 12022892 Prci5g1753 5 35852768 35860511 CCT