Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1742 ATGCAAATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTTGAGTCTTCTGATACCATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCTCCGGACCAGCAACGTCTCATCTTCGCCGGTAAACAGCTCGAGGATGGCCGGACCCTAGCCGACTACAACATCCAGAAGGAGTCGACGCTTCACCTCGTGCTCCGTCTCCGTGGTGGAGCCAAGAAGCGTAAGAAGAAGACCTACACAAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCTGTCCTCCAATTTTACAAGGTCGATGATTCAGGTAAGGTCCAGAGGCTCAGGAAGGAATGCCCCAATTCTGAGTGTGGGGCTGGAACTTTCATGGCTAACCACTTCGATCGCCATTACTGTGGCAAGTGCGGGACGACTTATGTCTACCAGAAGGCCGGTGGTGATTAA 471 0.5159 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNSECGAGTFMANHFDRHYCGKCGTTYVYQKAGGD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1742 156 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Prci5g1742 156 Gene3D - 1 80 - -
Prci5g1742 156 SMART ubq_7 1 72 IPR000626 GO:0005515
Prci5g1742 156 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Prci5g1742 156 PANTHER UBIQUITIN 1 89 - -
Prci5g1742 156 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Prci5g1742 156 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Prci5g1742 156 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Prci5g1742 156 CDD Ubl_ubiquitin 1 76 - -
Prci5g1742 156 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Prci5g1742 156 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Prci5g1742 156 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci5g1742 156 Gene3D - 81 154 IPR038582 -
Prci5g1742 156 PRINTS Ubiquitin signature 11 31 IPR019956 -
Prci5g1742 156 PRINTS Ubiquitin signature 53 74 IPR019956 -
Prci5g1742 156 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1742 Prci-Chr5 35750159 35750961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1742 1 153 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 92.810 2.44e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1742 K02977 - jre:108979100 276.174