Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1711 ATGAAAACGATGAAAGGAGGAGAAGGGAACGAGTACAAGAAAGGACTGTGGACGGAGGAAGAAGACAGGGTTTTGATGGAATACATCGGAGTTCATGGAAGAAAGCACTGGAACCGCATTTCCAAAGTCACTGGCTTGATGAGGAGTGGGAAGAGCTGCAGGTTAAGATGGCTCAACTATCTCAGTCCAAACGTCAAACATGGCAGTTTTACAGAGGAAGAAGACGACCTCATCATTCGACTCCATAATCTTCTTGGAAACAGGTGGTCTCTAATAGCTGGAAGGGTGCCTGGAAGAACAGACAATCAAGTAAAGAATCATTGGAACACTCATTTGTGCAAGAAACTTGGAATTACTAAGCAAACCAAAAGACCCATGAAACATAAAGAATCTTTAAAATCTAGTGCTTCACAATTAGAAGAGGCTCGAAATGTTCACACATCTCTAGATTCTATGCCTGTGATTCCTCTTGCTCTCAACCATAAAGGCAAAGAAGCTGAGATACAAGGTCAAGGAAGCCGCATGAGCAACAATAATTCTATGACAAATGTTGAAGAAGCACAACATTGTTGGCCATCTACGGAAAAAGATCACTTTGACCAAGCTTTTATGTTTAATGATGATCATACCTTTGTTCTACACAGTCCTCCCAGGTTAATGGAATTCTTTGATGGATTTGATATGATTTAA 690 0.4072 MKTMKGGEGNEYKKGLWTEEEDRVLMEYIGVHGRKHWNRISKVTGLMRSGKSCRLRWLNYLSPNVKHGSFTEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGITKQTKRPMKHKESLKSSASQLEEARNVHTSLDSMPVIPLALNHKGKEAEIQGQGSRMSNNNSMTNVEEAQHCWPSTEKDHFDQAFMFNDDHTFVLHSPPRLMEFFDGFDMI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1711 229 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Prci5g1711 229 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci5g1711 229 CDD SANT 69 112 IPR001005 -
Prci5g1711 229 Gene3D - 68 144 - -
Prci5g1711 229 FunFam Myb transcription factor 14 66 - -
Prci5g1711 229 SMART sant 13 63 IPR001005 -
Prci5g1711 229 SMART sant 66 114 IPR001005 -
Prci5g1711 229 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci5g1711 229 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci5g1711 229 CDD SANT 17 61 IPR001005 -
Prci5g1711 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 182 - -
Prci5g1711 229 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci5g1711 229 FunFam Transcription factor WER 68 143 - -
Prci5g1711 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci5g1711 229 MobiDBLite consensus disorder prediction 120 141 - -
Prci5g1711 229 Gene3D - 14 66 - -
Prci5g1711 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1711 Prci-Chr5 35543094 35546128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1711 1 226 MYB Transcription Factor Family AT5G40330 43.697 6.05e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1711 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1711 K09422 - cit:102614177 222.631