Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1682 ATGCCTTATTCTGCAATGTCTTGGGTTCACTCTCAAATTCTGCAGAACAATGGTGGCATGGCTGGCCAGCCTATTCTTTCCCCATCTCCTTCTCCTCCTCCATTGCCTTTCATTTCTAACTATCAGAAGCAAATAAGCCCACCTCCAGTTTCTTCATCTGGAAGCAAAATAAGTCCAGCAGTTCTTTTTATCATAGTTGTGCTAGCTATTGTGTTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAATGGATACCCAGATATGTCTGAATCAGATACTTACCAGCGGCAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTTATAGATGCTCTTCCTGTCTTCTTCTACAAGGAGATAATAGGCTTGAAAGAGCCTTTTGATTGTGCCGTTTGCCTCTGTGAATTCTCAGATCAAGACAAGTTGAGGTTGCTGCCCATGTGCAACCACGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATGCCCCAGGATTTCCGATTGAAAACTCAGTTTTTGACTTTGAAGAGCCGAGGGAAGAAGATGGGGTTTCAGCAGGCACTGTTGGAGTTGATACTGCTTCTGTTCACAAACATGCAGAAAATCACATTATGAGCGGAAGAAGGGTGTTTTCTGTGAGACTTGGGAAATTTAGAAGCACACATACCAGACAAGGAGTAGAAAATTGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTCCAGTACGTGGTTGCTGATTCAGATTTAAGGGTAGCTTTATGCCCCAATAGAGGTGATGTGAGTAGTGGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAAATGGGAATAATCCTTCAGCTGATTCTGATTTTGAGGGCAAAAAACTCAACATTGCCAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCCAAAAAGGATAGATTACCAAGTTCTTCAGTAACCCATGTTGGAAATCCCACTAATGTCAATTCGAATTTGCCTTGGATGAATAGAACTAGAGGTACATGA 1158 0.4214 MPYSAMSWVHSQILQNNGGMAGQPILSPSPSPPPLPFISNYQKQISPPPVSSSGSKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNGYPDMSESDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDQDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFPIENSVFDFEEPREEDGVSAGTVGVDTASVHKHAENHIMSGRRVFSVRLGKFRSTHTRQGVENCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSGSMRQLKVRVAQNGNNPSADSDFEGKKLNIARKGESFSVSKIWLWSKKDRLPSSSVTHVGNPTNVNSNLPWMNRTRGT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1682 385 FunFam RING-H2 finger protein ATL46 111 196 - -
Prci5g1682 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 350 - -
Prci5g1682 385 SUPERFAMILY RING/U-box 128 197 - -
Prci5g1682 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 196 IPR013083 -
Prci5g1682 385 Pfam Ring finger domain 148 191 IPR001841 -
Prci5g1682 385 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Prci5g1682 385 SMART ring_2 149 190 IPR001841 -
Prci5g1682 385 CDD RING-H2_EL5-like 148 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1682 Prci-Chr5 35305433 35307257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1682 50 363 C3H Transcription Factor Family AT2G18650 40.230 1.19e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1682 - - gmx:100794750 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g1682 5 35305433 35307257 Prci5g1682 5 35305433 35307257 ECH