Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1633 ATGATTATTTACCGTTCCGCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATGTCTTCTCCCATTTCAAGCACACATACTTCTTCCGCTTCACTTCTTCGCCTTCTTTGGTTAATGTTCCCTTCATTTCGCTTTCTCGTCCTCGCCAACGGCTGTTCAAGGCGTTCGGGAGTGCCATCGTGGCGGCCGCAAATACAAAAAGGATAGACACATTCTTGGCGGAAGAAGATGTTTCGTGGAATTCACTTCGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTAGTATTGGCCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCGTCTGTGCTTTCTGGAAAGGACGTGGTTATTGCAGCGGAGACTGGTAGTGGTAAAACACACAGTTATCTAGTTCCTCTAATTGATAAGCTACGAGGTTCACACTACAATTCTGCCAATGCTGTCAGTTATCAAAAAGAGCCTCTCTGTAAGATTCTGCTAGTTCTGTGTCCAAATGTACAACTCTGTGAACAAGTAGCTCAAATGGCTAACAGTATTTGTGGGGACGATGGTACGCCGATGGTTAGTGTGGCAGCCATTTGTGGAAGACAGGGATGGCCTATTCATGAACCAGATATAATTGTGACAACACCCGTTGCTCTTCTAAACTATGTTGAACAAAACAGAAACCGCCGAATGGAATTTATGCGCAGTGTTAAATATGTGGTCTTTGATGAAGCTGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACCTGCTTCGCTTTGATGAAAAGCTCTTATCCCAATTGAAAGAACCAGTATCAGGGTTGCCATTGGAGCTAGAATCTACCTTGTCATCACACAGTGACAGTGCCATATACGGTGAACAGAAACAGCCTACTGAAGACACCATCTCAGAAGATGGGAATGTTGATATTGATACCCATATGGTCGACACCAATAACAAAGCTGGTTCAATCAAGAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCATAGTAAGCAGTACCTTTTTGTTGCCGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAATATTAAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAGCTGTGAGACAAGGTTTCAGTCAAGATTTGGATGGTTTTGGGGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCAGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTACGCTATCATAAGGATCGCACCTTGGATGAGCGAGCTAAGGCCTTAGTTGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGACATTCCAAACGTCTCACATGTTATCCAGAAAAGTTGGTCAAATTCTTTAAAAAGAGCGCTGTCATGCCTTATGGAGCACAATTTGGATTTTGACGCTCCCACAATATGCTGA 1575 0.4362 MIIYRSALMLHLQIPSIRSHVFSHFKHTYFFRFTSSPSLVNVPFISLSRPRQRLFKAFGSAIVAAANTKRIDTFLAEEDVSWNSLRLSDAISRALSSIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRGSHYNSANAVSYQKEPLCKILLVLCPNVQLCEQVAQMANSICGDDGTPMVSVAAICGRQGWPIHEPDIIVTTPVALLNYVEQNRNRRMEFMRSVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQLKEPVSGLPLELESTLSSHSDSAIYGEQKQPTEDTISEDGNVDIDTHMVDTNNKAGSIKRRDWRRVRKNYEHSKQYLFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVDTQVDELIKAVRQGFSQDLDGFGGISRTMVFANTVEAVEAVAKILVRSGIECLRYHKDRTLDERAKALVEFREKGGVLVCTDAAARGVDIPNVSHVIQKSWSNSLKRALSCLMEHNLDFDAPTIC 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1633 524 Pfam DEAD/DEAH box helicase 106 267 IPR011545 GO:0003676|GO:0005524
Prci5g1633 524 Pfam Helicase conserved C-terminal domain 426 497 IPR001650 -
Prci5g1633 524 SMART helicmild6 438 505 IPR001650 -
Prci5g1633 524 CDD DEADc 91 271 - -
Prci5g1633 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 500 IPR027417 -
Prci5g1633 524 CDD SF2_C_DEAD 390 497 - -
Prci5g1633 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 524 IPR001650 -
Prci5g1633 524 SMART ultradead3 99 393 IPR014001 -
Prci5g1633 524 Gene3D - 383 509 IPR027417 -
Prci5g1633 524 Gene3D - 64 372 IPR027417 -
Prci5g1633 524 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 499 - -
Prci5g1633 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 374 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1633 Prci-Chr5 35115946 35119681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1633 74 264 Eukaryotic Initiation Factors Gene Family AT3G13920 24.378 3.13e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1633 - - gmx:100780518 654.44