Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1631 ATGATTATTTACCGTTCCGCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATGTCTTCTCCCATTTCAAGCACACATACTTCTTCCGCTTCACTTCTTCGCCTTCTTTGGTTAATGTTCCCTTCATTTCGCTTTCTCGTCCTCGCCAACGGCTGTTCAAGGCGTTCGGGAGTGCCATCGTGGCGGCCGCAAATACAAAAAGGATAGACACATTCTTGGCGGAAGAAGATGTTTCGTGGAATTCACTTCGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTAGTATTGGCCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCGTCTGTGCTTTCTGGAAAGGACGTGGTTATTGCAGCGGAGACTGGTAGTGGTAAAACACACAGTTATCTAGTTCCTCTAATTGATAAGCTACGAGGTTCACACTACAATTCTGCCAATGCTGTCAGTTATCAAAAAGAGCCTCTCTGTAAGATTCTGCTAGTTCTGTGTCCAAATGTACAACTCTGTGAACAAGTAGCTCAAATGGCTAACAGTATTTGTGGGGACGATGGTACGCCGATGGTTAGTGTGGCAGCCATTTGTGGAAGACAGGGATGGCCTATTCATGAACCAGATATAATTGTGACAACACCCGTTGCTCTTCTAAACTATGTTGAACAAAACAGAAACCGCCGAATGGAATTTATGCGCAGTGTTAAATATGTGGTCTTTGATGAAGCTGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACCTGCTTCGCTTTGATGAAAAGCTCTTATCCCAATTGAAAGAACCAGTATCAGGGTTGCCATTGGAGCTAGAATCTACCTTGTCATCACACAGTGACAGTGCCATATACGGTGAACAGAAACAGCCTACTGAAGACACCATCTCAGAAGATGGGAATGTTGATATTGATACCCATATGGTCGACACCAATAACAAAGCTGGTTCAATCAAGAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCATAGTAAGCAGTACCTTTTTGTTGCCGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAATATTAAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAGCTGTGAGACAAGGTTTCAGTCAAGATTTGGATGGTTTTGGGGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCAGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTACGCTATCATAAGGATCGCACCTTGGATGAGCGAGCTAAGGCCTTAGTTGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGACATTCCAAACGTCTCACATGTTATCCAGGCAGATTTTGCTAGTTCTGCTGTAGACTTTTTGCATAGGATTGGCAGAACTGGTCGAGCTGGTCAATTTGGACTTGTGACTAGCATGTACACTGAATCTAACAGGGAGCTTGTTGATGCGGTTCGCCGAGCAGGGGAACTTGGTCGACCAGTGTTCTGCAGGAGAGAGCATTTAGTAGAAAAAGAAGTTTCCGTAACAAGATCAAGAAGAGGGCGGCAAACCTAG 1716 0.4429 MIIYRSALMLHLQIPSIRSHVFSHFKHTYFFRFTSSPSLVNVPFISLSRPRQRLFKAFGSAIVAAANTKRIDTFLAEEDVSWNSLRLSDAISRALSSIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRGSHYNSANAVSYQKEPLCKILLVLCPNVQLCEQVAQMANSICGDDGTPMVSVAAICGRQGWPIHEPDIIVTTPVALLNYVEQNRNRRMEFMRSVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQLKEPVSGLPLELESTLSSHSDSAIYGEQKQPTEDTISEDGNVDIDTHMVDTNNKAGSIKRRDWRRVRKNYEHSKQYLFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVDTQVDELIKAVRQGFSQDLDGFGGISRTMVFANTVEAVEAVAKILVRSGIECLRYHKDRTLDERAKALVEFREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRIGRTGRAGQFGLVTSMYTESNRELVDAVRRAGELGRPVFCRREHLVEKEVSVTRSRRGRQT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1631 571 Pfam Helicase conserved C-terminal domain 426 518 IPR001650 -
Prci5g1631 571 Gene3D - 62 372 IPR027417 -
Prci5g1631 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 563 IPR001650 -
Prci5g1631 571 SMART helicmild6 438 518 IPR001650 -
Prci5g1631 571 CDD DEADc 91 271 - -
Prci5g1631 571 CDD SF2_C_DEAD 390 527 - -
Prci5g1631 571 SMART ultradead3 99 393 IPR014001 -
Prci5g1631 571 Pfam DEAD/DEAH box helicase 106 267 IPR011545 GO:0003676|GO:0005524
Prci5g1631 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 530 IPR027417 -
Prci5g1631 571 Gene3D - 392 565 IPR027417 -
Prci5g1631 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 374 IPR014001 -
Prci5g1631 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1631 Prci-Chr5 35114997 35119680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1631 333 544 Eukaryotic Initiation Factors Gene Family AT5G11200 27.459 7.39e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1631 - - qsa:O6P43_025347 741.495