Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci5g1611 | ATGAAGAGGTCCAGAGACGATGGTTATATGAGCTCTCAACTCAAACGGCCCATGGTGTCTTCACGAGGAGAAACATCGGGGCAGCCCCAGATGATGGCCGGAGGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAAAAATATGATGATTTTTTAGAAGTCATGAAGGACTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAATACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCCGTGCAAAAGAAGCCCGTTGAATTTGAAGAAGCTATAAATTTTGTTAACAAAATTAAGTCTCGCTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCACCCTGATCTTCTTGATGAGTTTACTCACTTTCTTCCTGACACTTCGTCAACAGCATCTGCACATTATGCTCCTTCTCGGAACTCTATGCTTCGGGATAGGAGCTCTGCAGTGCCAAGGCGAATGAGTATTGAAAAGAAAGAAAGGACTGTGGATTCTCATGTTGATCATGACCTCAGTGTTGATCGTTCTGATCCAGAACATGACAGAGTTATCATTAAGGCAGAAAAGGAGCAGAGGAGATGTGTTGAGAAGGAAAAGGACCTTAGAGAAGAGAGGGATAGGAAAGATCATGAACGGGATGATAGAAATTATGGGCCTGATGGTAGCCGGGACTTTACCATGCAACACTTCCCCCACAAACGGAAATCTGGTCGGAGGACTGATGACACTGGTGCTGAACCATTGCATCAAGGTGGTGATTCTGATGAAAATTTGAGCATGCGCCCTATGTCATCCACCTGTGATGACAAAAGTTCTGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAATTACGAAATCCTGAAGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGTCAAGAATTGGAATCCTTGGTGCGTGATTTATTGGGAAAATATCCAGACCTCATGGAGGGGTTTAATGAATTTTTGTCCAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTGATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCATGTAAACCAGCAAAGGCAGAGGACAAGGATAGAGACAGAGCTCAAGATCATGACAGGGATGATCGGGTTAAAGAAAGAGATTGTGAACTCCGAGAAAGGGACAAATCTTCTGCTTTTATTAGCAGGGATGTTTCAGGTCCTAAGATGTATCCATTTTCCAGCAAGGATAAGTATTACGCAAAACCTATAAATGAGCTAGACCTTTCGAACTGTGAGCAATGCACTCCCAGCTACCGTTTCCTACCAAAAAATTATCCCATACCCATGGCGAGCCAGAGAACTGAGATTGGTGCTGAAGTATTGAATGATCATTGGGTTTCTGTTACTTCAGGAAGTGAAGACTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTGGAGTCTGTGAATGTGACAACGAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATCATTAAAGCAGACAGCCCTATTTGTATTGAGGAGCACTTGACAGCTCTAAATCGAAGGTGCATTGAACGATTATATGGTGATCATGCACTTGATGTAATGGAGGTGTTAAAAAAGAATGCACCTCTAGCTTTACCTGTCATCTTAAGCCGTTTGAAGCAGAAGCAAGAAGAGTGGGCTAGGTGCCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAAGATAAAAAAAGCTTGAGCACAAAAGCCTTGCTGGCTGAAATCAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCCGCTGGAAATAGACGTCCTATTATTCCAAATTTGGAATTTGAGTATCCAGACCCAGATATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACCGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGCTTGGTGTTCCTTCACGACCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCGAAGCATAAATCTGTCAAAGGTGGCACTGCAAGTTTTGGTGGTAGTGATGATAGTCCTGGTGTAGTTGCAAATGTAATGAGTTCAAGACAATTAAATACATCTAGAAATGGGGATGAAAGTATTTCATTAGAACAGTCAAATTCAAAGGCTGAAACTTTGGATTATAGTAAACATCATGATGGAATGCATATAAATTCATCCATGCCTGACGAGGCATCAGTGGCCAACAAACAAGTTCATTCCAGTGAACGGTTAGTGAATGCTAATGTCTCAATGGCTTCTAGAATTGAACAGAGTAACGAGAGAACGAACATAGATCCTGCATCAGGGCTTGCTGCTACTCCATCAAGACCTGGTATTGTTGCTGCTGGGGAGGGTGGCGATTCTACAAGACCAGCTACACCTATAAATGGGGCTGTCACAGAAGGCAACAAAGTTCACAGATACCAAGAAGAACCTACTGGACGCTTCAAAAGTGAAAGAGAAGAGGGTGAACTATCTCCTAATGGAGATTTTGAGGATAGCTCTGCAGTGTATGGAGATGCTAGTTTAACAGCAGTAGGACACAAAGGAAAGAATGGCGGTGGGAGTATGCAATACCAAAATAGACGTGAAGAAGGTTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGTGAAGGAAGCCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCGGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTATCAAGAAGAGCATGAGGAGGATGAGGAACATGATAACAAGGTTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTGGAAGGAGATGGAATATCATTGCCATTTTCAGAACGCTTTTTGCTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTATGTTCCACGAGAAAGAAAGGTTTTTTAGAGTTTTTTATGGAAATGATTCCTTATATGTGCTTTTTAGGCTTCATCGGACATTGTATGAGAGGATACAATCAGCAAAGTTGAACTCATCATCTGCAGATAGGAAATGGAGGGCTTCAAATGATGTAAATTCTAATGATCAATATGGCAGATTCATGACTGCCCTGTATAACCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATATGTGTTATTTACATTAGACAAGTTGATATATAAGCTTGTTAGACAGCTGCAAGCAGTTGCTACTGATGAGATGGATAACAAGCTTCTCCAACTTCATTCATACGAGAAATCAAGAAAATCTGGAAGATTTTTTGATATAGTTTATTATGAAAACGCTCGAGTTCTTCTTCATGAAGAGAACATGTACCGTATTGAATGTTCATCTACACCAACACGGCTATCTATTCAATTGATGGACTATGGACATGATAAGCCTGAGGCAACTGCTGTGTCTATGGATCCTAACTTTTCGGCCTATTTGCACAATGACTTCCTTTCTGTTTTTCCTGAAAAAAATAAGTCAGGAATTTTCTTGAAAAGGAATAAACGCAAATATGCCTGTGGTGATGAACTTTCAAGCCAGGCCATGAAAGGATTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGACACAGAGGACTTTTTATTTCGAATGAGAAGGAAAAGGAAAGCTTTGCATCAGAACAGATTAACTCATGAGCAGACAAATTCTAAAAACGTTTGTTCAAGGAGAGCACAGCAGTTCCGGAGATTGTTTTCCATCACATGA | 4194 | 0.4053 | MKRSRDDGYMSSQLKRPMVSSRGETSGQPQMMAGGAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSSTASAHYAPSRNSMLRDRSSAVPRRMSIEKKERTVDSHVDHDLSVDRSDPEHDRVIIKAEKEQRRCVEKEKDLREERDRKDHERDDRNYGPDGSRDFTMQHFPHKRKSGRRTDDTGAEPLHQGGDSDENLSMRPMSSTCDDKSSVKSMYSQEFAFCEKVKEKLRNPEVYQEFLKCLHIYSREIITRQELESLVRDLLGKYPDLMEGFNEFLSRCEKNDGFLAGVMNKKSFWNEGIACKPAKAEDKDRDRAQDHDRDDRVKERDCELRERDKSSAFISRDVSGPKMYPFSSKDKYYAKPINELDLSNCEQCTPSYRFLPKNYPIPMASQRTEIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKADSPICIEEHLTALNRRCIERLYGDHALDVMEVLKKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDKKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHKSVKGGTASFGGSDDSPGVVANVMSSRQLNTSRNGDESISLEQSNSKAETLDYSKHHDGMHINSSMPDEASVANKQVHSSERLVNANVSMASRIEQSNERTNIDPASGLAATPSRPGIVAAGEGGDSTRPATPINGAVTEGNKVHRYQEEPTGRFKSEREEGELSPNGDFEDSSAVYGDASLTAVGHKGKNGGGSMQYQNRREEGCGEAAGENDADVDEGEGSPHRSSQDSENASENGHVSGSESADGEECYQEEHEEDEEHDNKVESEGEAEGMADANDVEGDGISLPFSERFLLSVKPLAKHVPPMFHEKERXFFRVFYGNDSLYVLFRLHRTLYERIQSAKLNSSSADRKWRASNDVNSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVRQLQAVATDEMDNKLLQLHSYEKSRKSGRFFDIVYYENARVLLHEENMYRIECSSTPTRLSIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSVFPEKNKSGIFLKRNKRKYACGDELSSQAMKGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRRKRKALHQNRLTHEQTNSKNVCSRRAQQFRRLFSIT | 1398 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 323 | 337 | - | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 1020 | 1035 | - | - | |
| Prci5g1611 | 1398 | Gene3D | Paired amphipathic helix | 43 | 105 | IPR036600 | GO:0006355 | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 216 | 315 | - | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 436 | 457 | - | - | |
| Prci5g1611 | 1398 | Gene3D | Paired amphipathic helix | 121 | 194 | IPR036600 | GO:0006355 | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 194 | 211 | - | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 14 | 33 | - | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 936 | 959 | - | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 812 | 841 | - | - | |
| Prci5g1611 | 1398 | SUPERFAMILY | PAH2 domain | 121 | 192 | IPR036600 | GO:0006355 | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Prci5g1611 | 1398 | Pfam | Paired amphipathic helix repeat | 361 | 405 | IPR003822 | GO:0006355 | |
| Prci5g1611 | 1398 | Pfam | Paired amphipathic helix repeat | 60 | 104 | IPR003822 | GO:0006355 | |
| Prci5g1611 | 1398 | Pfam | Paired amphipathic helix repeat | 146 | 190 | IPR003822 | GO:0006355 | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 893 | 1077 | - | - | |
| Prci5g1611 | 1398 | FunFam | Paired amphipathic helix SIN3-like protein | 122 | 193 | - | - | |
| Prci5g1611 | 1398 | Pfam | C-terminal domain of Sin3a protein | 1113 | 1358 | IPR031693 | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 194 | 337 | - | - | |
| Prci5g1611 | 1398 | Pfam | Sin3 family co-repressor | 502 | 593 | IPR013194 | - | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 798 | 842 | - | - | |
| Prci5g1611 | 1398 | ProSiteProfiles | PAH domain profile. | 37 | 107 | IPR003822 | GO:0006355 | |
| Prci5g1611 | 1398 | SMART | hdac_interact2seq4b | 500 | 600 | IPR013194 | - | |
| Prci5g1611 | 1398 | ProSiteProfiles | PAH domain profile. | 339 | 408 | IPR003822 | GO:0006355 | |
| Prci5g1611 | 1398 | Coils | Coil | 573 | 593 | - | - | |
| Prci5g1611 | 1398 | FunFam | Paired amphipathic helix protein Sin3 | 43 | 105 | - | - | |
| Prci5g1611 | 1398 | PANTHER | SIN3B-RELATED | 37 | 1257 | IPR039774 | GO:0003714 | |
| Prci5g1611 | 1398 | SUPERFAMILY | PAH2 domain | 37 | 106 | IPR036600 | GO:0006355 | |
| Prci5g1611 | 1398 | Gene3D | Paired amphipathic helix | 337 | 410 | IPR036600 | GO:0006355 | |
| Prci5g1611 | 1398 | Coils | Coil | 250 | 273 | - | - | |
| Prci5g1611 | 1398 | SUPERFAMILY | PAH2 domain | 339 | 406 | IPR036600 | GO:0006355 | |
| Prci5g1611 | 1398 | FunFam | Paired amphipathic helix protein SIN3 | 337 | 410 | - | - | |
| Prci5g1611 | 1398 | ProSiteProfiles | PAH domain profile. | 123 | 193 | IPR003822 | GO:0006355 | |
| Prci5g1611 | 1398 | MobiDBLite | consensus disorder prediction | 1041 | 1059 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci5g1611 | Prci-Chr5 | 34916705 | 34926932 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci5g1611 | 28 | 120 | WRKY Transcription Factor Family | AT4G12020 | 58.947 | 1.25e-23 | 107 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Prci5g1611 | Sin3a_C | 3.3e-57 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci5g1611 | K11644 | - | mnt:21394293 | 2020.74 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Prci10g1805 | 10 | 14483480 | 14494524 | Prci5g1611 | 5 | 34916705 | 34926932 | CCT | |
| Prci5g1611 | 5 | 34916705 | 34926932 | Prci5g1611 | 5 | 34916705 | 34926932 | ECH |