Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1608 ATGATGCCTCGCACGTGCTCACAGTGTGGCACCACCGGCCACAACTCCCGAACATGCGCCGACGGCAACAGCGGCACTGGCGAGAACAGTATCTTACTGTTCGGAGTGCGAGTCACGCAAGGGAACTCGTTCAGGAAGAGCGCTAGCATGACCGATCTATCACAGTACGAACAGCCGGCGCCTCAGGATCCCAACGCCGATGCCGATTACGTCTCCGATGATGTCGTTCACGCTTCTGGTCGCAGCCGCGAGCGAAAGAGAGGTGTTCCATGGACGGAGGAGGAGCATAGGCTATTCCTCTTGGGGCTCCGGCAGGTCGGTAAAGGTGATTGGAGAGGGATTTCTAGAAACTTCGTGAGAACTCGGACACCAACTCAGGTAGCCAGTCATGCTCAGAAGTACTTCCTCCGCCGCCATCACCAGAACAGGAGACGCCGGAGATCTAGTCTGTTTGATATCACCACCGATACGGTTATGGAATCTTCAACGGCAGTGGAAGGAGGTAGAATCCACCAAGAAGCGGTCCCGCCCAAATATCCCCATTCCGCTAGCTTCAACGGTTCTGCTTTTCAGATGACGCTGTCCCCGCCGATGTCTCCGACGGGAGCTAAATTAATAAGGCCAACGCCGATCCTGCCAATTGCTCCATCGTCGAACATGGCGAATTTAAACTTGAAAGAGAAAGGTTACGTGGCCGTCTCTCTGCCGGCGAGCAAGGAGAAGTCGTCGACGACAAGTAGCAGGACGTCGGCGTTGGCTTTGGAGGTGATTTCAGGGAAGCTAAGCGGTGGCGGTGATCGCAGTAGCATGATTAGTGTTGCTTGA 825 0.5503 MMPRTCSQCGTTGHNSRTCADGNSGTGENSILLFGVRVTQGNSFRKSASMTDLSQYEQPAPQDPNADADYVSDDVVHASGRSRERKRGVPWTEEEHRLFLLGLRQVGKGDWRGISRNFVRTRTPTQVASHAQKYFLRRHHQNRRRRRSSLFDITTDTVMESSTAVEGGRIHQEAVPPKYPHSASFNGSAFQMTLSPPMSPTGAKLIRPTPILPIAPSSNMANLNLKEKGYVAVSLPASKEKSSTTSSRTSALALEVISGKLSGGGDRSSMISVA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1608 274 CDD SANT 90 135 IPR001005 -
Prci5g1608 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 86 137 IPR006447 GO:0003677
Prci5g1608 274 ProSiteProfiles Zinc finger CCHC-type profile. 6 19 IPR001878 GO:0003676|GO:0008270
Prci5g1608 274 MobiDBLite consensus disorder prediction 1 24 - -
Prci5g1608 274 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Prci5g1608 274 FunFam transcription factor MYB1R1 89 140 - -
Prci5g1608 274 Gene3D - 89 140 - -
Prci5g1608 274 MobiDBLite consensus disorder prediction 49 69 - -
Prci5g1608 274 SUPERFAMILY Homeodomain-like 85 138 IPR009057 -
Prci5g1608 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Prci5g1608 274 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Prci5g1608 274 SMART sant 87 137 IPR001005 -
Prci5g1608 274 ProSiteProfiles SANT domain profile. 86 139 IPR017884 -
Prci5g1608 274 PANTHER TRANSCRIPTION FACTOR KUA1 3 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1608 Prci-Chr5 34859813 34861264 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci5g1608 Myb_DNA-binding 1.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1608 - - var:108322503 302.367