Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1590 ATGGATCCGGCGGCAATCAATATGATGAACGACGGTTCGTTTGCGAATGGAAACGCTAATACGGCGTCGTATAACTTGGCGGAGATCTGGCAGTTCCCGATGAACGGCGGTGCGGGTCTCGGGGAGTCTGGAGGCAGGTTGGGCTTGAGGAAGCCGCAGTTTGGACAAAATTTGGGGCACTTTGGTGATTTTACGTCGGGTCCGAATCGGAATGTCCCGGGTAATGATCCGAACTGTTCGGAGCAGGGAGCGAATGGGGTCAGTAAGAAGAAACGCGATTCCGAGGAGGAATTGGCTAAAGACGTCTCCACCACCAGCAACGTTGGCATTGGCAATAGCAATGGCGTGAATAATGGTGACGGAAAACGGCTTAAATTATCAGGGAATAGGAATGAGAGCCGTGAAATTGAAGCTGAAACAAAAACCAATTCAGAAAATCCAGCGGAGCAAAGCACTCAACCAGCTTCTGAGCCTCCGAAACCAGCTTACATCCATGTACGGGCTAGAAGGGGTCAAGCTACTGATAGTCACAGTCTAGCGGAAAGAGCTAGGAGGGAAAAGATAAGCGAGAGGATGAAAATTCTTCAGGAGTTGGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATTAATTATATTCAGTCACTACAGCGCCAAGTTGAGTTCTTGTCGATGAAGCTTGAAGCTGTAAATTCAAGAGTTAACCCTGGTGTTGAAGTTTTCCCTCCTAAAGATTTTGGTCAACAAACATTTGACATGGCAATTGGTCCTCAAGCTAGACGAGATCAGTTCAGCCGGGGATCTTCACCGGAGTGGTTACATATGCAGGTTGGAGGTGGATTTGGAAGACATTAA 873 0.4777 MDPAAINMMNDGSFANGNANTASYNLAEIWQFPMNGGAGLGESGGRLGLRKPQFGQNLGHFGDFTSGPNRNVPGNDPNCSEQGANGVSKKKRDSEEELAKDVSTTSNVGIGNSNGVNNGDGKRLKLSGNRNESREIEAETKTNSENPAEQSTQPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVNPGVEVFPPKDFGQQTFDMAIGPQARRDQFSRGSSPEWLHMQVGGGFGRH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1590 290 MobiDBLite consensus disorder prediction 59 160 - -
Prci5g1590 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Prci5g1590 290 MobiDBLite consensus disorder prediction 101 120 - -
Prci5g1590 290 SMART finulus 178 228 IPR011598 GO:0046983
Prci5g1590 290 CDD bHLH_AtBPE_like 163 247 - -
Prci5g1590 290 Gene3D - 169 243 IPR036638 GO:0046983
Prci5g1590 290 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 260 IPR024097 GO:0006355
Prci5g1590 290 FunFam Basic helix-loop-helix transcription factor 169 241 - -
Prci5g1590 290 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Prci5g1590 290 Coils Coil 219 239 - -
Prci5g1590 290 MobiDBLite consensus disorder prediction 86 100 - -
Prci5g1590 290 MobiDBLite consensus disorder prediction 59 85 - -
Prci5g1590 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 240 IPR036638 GO:0046983
Prci5g1590 290 MobiDBLite consensus disorder prediction 125 142 - -
Prci5g1590 290 MobiDBLite consensus disorder prediction 143 157 - -
Prci5g1590 290 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1590 Prci-Chr5 34761858 34764867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1590 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.755 3.02e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1590 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1590 - - qsa:O6P43_025379 381.719