Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1554 ATGCCCTCCATGGCTGGTCCTAAGCTTTACGCTCCCTCAAATCTCACAGCCTTTCTTCAAAACGAAACCCTTCCTTCCCCCTCTCATGTTCTTGACTCTTTCTTGCTTCACCACTCTGAGCTCTCCTTTCAAGGTTCGAAACCTCTGGTTGATTTCGAGAATGTTAGTGGAAGCACAGTCACAGAATTGCCATTTTTCCAAGGTCTAGACAAAGAAGAGACCACTGAAGAGGAATACGATGCCTGCTTTAATCAACCAGGGAAGAAGAGGAGGCTCTCGAGCCAACAAGTTCAGTTCCTCGAGAAGAACTTCGCGGTAGAAAACAAGCTCGAACCCGAAAGAAAAGTTCAACTCGCTAAAGAACTCGGCTTGCAGCCGAGGCAAGTCGCTATTTGGTTTCAGAACCGAAGAGCTCGGTTCAAGACCAAGCAGCTCGAGAAAGACTACGCCACCTTAAAAGCTAGCTACGACAAACTCAAAGGTGACTATGATGGTTTAATTCAGCAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAGGTTGGTGGGGAGAGATAAAGCGAAAGGAGAGAATTACGGGAAGTGTGTTGTCGATGTTTTGATCTCAAATAACGGAGCTTCCTGTGAAGATGGGTCGAAAGTGGAAAAAGTCCCTACAGTAATATGCAAACAAGAAGATGCTAATTCGGCTAAAAGTGATGTGTTTGATTCAGAAAGCCCACACCAAACTGCAGATTCGTCCCATGCCTTCGAAGCTGCAGATCACTCAGATTTCTCACAGGACGAAGAAGATAACCTGAGTCATCATAACCTCTTGAGTCTGCCATGCCTGCCAAAGGTTGAAGAAGAGCCCTGTAACTTCGGATTCCCAGATGATGAAGATCAACCCTTCTGTTTTTGGTCTTATTATGTTAGTAATTGA 930 0.4484 MPSMAGPKLYAPSNLTAFLQNETLPSPSHVLDSFLLHHSELSFQGSKPLVDFENVSGSTVTELPFFQGLDKEETTEEEYDACFNQPGKKRRLSSQQVQFLEKNFAVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYATLKASYDKLKGDYDGLIQQNDKLKEEVNSLKNRLVGRDKAKGENYGKCVVDVLISNNGASCEDGSKVEKVPTVICKQEDANSAKSDVFDSESPHQTADSSHAFEAADHSDFSQDEEDNLSHHNLLSLPCLPKVEEEPCNFGFPDDEDQPFCFWSYYVSN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1554 309 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Prci5g1554 309 Gene3D - 81 150 - -
Prci5g1554 309 CDD homeodomain 86 144 IPR001356 GO:0003677
Prci5g1554 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 264 IPR045224 GO:0003700
Prci5g1554 309 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Prci5g1554 309 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Prci5g1554 309 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Prci5g1554 309 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Prci5g1554 309 SMART HOX_1 85 147 IPR001356 GO:0003677
Prci5g1554 309 Coils Coil 142 183 - -
Prci5g1554 309 FunFam homeobox-leucine zipper protein ATHB-6-like 91 137 - -
Prci5g1554 309 Pfam Homeobox associated leucine zipper 143 184 IPR003106 GO:0006355|GO:0043565
Prci5g1554 309 Pfam Homeodomain 88 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1554 Prci-Chr5 34471019 34472944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1554 25 198 Homeobox Transcription Factor Family AT3G01470 47.159 1.66e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci5g1554 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1554 - K09338 qsu:112000549 326.635