Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1551 ATGGAATCACAGTTGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGACTGACAATTTTATCATCACCGACCCCTCTATCTCTGGCCATCCGATTGTTTTTGCGAGCCATGGGTTCTTGAAAATGTCAGGCTATTCCAGAGCCGAGGTGATTGGCAAGAATGGTAGGATTTTTCAAGGAACAGGGACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCAATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGCAAACCTCTTTGGATTTTGTTTCACATGAGTCCTGTATTTAACAAGTATGATGGCAGGGTGAGTCACTTCGTTGCAGTTCAGGTTCCTCTATCGAGGAAACGGAGGCGTTCCGGATGTGACTTCAGGAGAACTGGTGTTAATTTGAGTGACGATGGGTCTAAGGCTCAGGATTTTGTGTACGGATCGTGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACCTGGTCATGTTTTGTCCCTTCATCAAGTGTCAGAAGTTGAACATGAGGGTAGAGAATCAAATGGTGAAGCACCGTGTGAGGCAAGCGATGTTGATAAGAGACAAGCCATGACTGCCATGGACAACATTTTTTCTGTTCTAACCCACTATAGTGAGTTGAGTGGCAGATTGGTTTGTAGAAAGAGATGCAGCATTTCTGACGGGGGTCTTCTTAGCTCATCGTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTTTACGCCAGTGATGCCTTCTTGAAATTAACAGGTTACGTAAAAGATGAAGTGCTGCGACGCAATTGTAGATTTCTAAGTGGACCGGATACTGATAGCTCAACTTTATATTTGATAAGGGATAGCATTAAATCTGAGCAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGATAGCCCATTTTGGAATTTTCTACATATATCGCCTATTCGTGATGCCTCTGGCAAGATAGCATACTTTGTGGGTGTTCAAGTAGAAGAAGGCAAAAACAACCAAGGTAGACACGGTCTCAGCCCTGAGAAGATTCAACTTAGCGTGGTTGGAGCAGTTAAGGTTGCTGTGAGGAGTTCATCAATGACTGCTGCATCTTCGAAGTCAAATACAGCATAA 1221 0.4308 MESQLGLIDQSFDSRYSCHVREALDELTDNFIITDPSISGHPIVFASHGFLKMSGYSRAEVIGKNGRIFQGTGTCRRSVIEIREAIREERPIQINLLNYRKDGKPLWILFHMSPVFNKYDGRVSHFVAVQVPLSRKRRRSGCDFRRTGVNLSDDGSKAQDFVYGSCRKEVCSDSLLEPGHVLSLHQVSEVEHEGRESNGEAPCEASDVDKRQAMTAMDNIFSVLTHYSELSGRLVCRKRCSISDGGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYVKDEVLRRNCRFLSGPDTDSSTLYLIRDSIKSEQPCTVRILNYRKDDSPFWNFLHISPIRDASGKIAYFVGVQVEEGKNNQGRHGLSPEKIQLSVVGAVKVAVRSSSMTAASSKSNTA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1551 406 CDD PAS 271 360 IPR000014 -
Prci5g1551 406 FunFam protein TWIN LOV 1 262 398 - -
Prci5g1551 406 SUPERFAMILY PYP-like sensor domain (PAS domain) 30 130 IPR035965 -
Prci5g1551 406 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Prci5g1551 406 Gene3D PAS domain 262 405 - -
Prci5g1551 406 SMART pac_2 325 366 IPR001610 -
Prci5g1551 406 SMART pac_2 93 136 IPR001610 -
Prci5g1551 406 ProSiteProfiles PAC domain profile. 322 376 IPR000700 -
Prci5g1551 406 Gene3D PAS domain 17 141 - -
Prci5g1551 406 ProSiteProfiles PAS repeat profile. 275 321 IPR000014 -
Prci5g1551 406 CDD PAS 27 130 IPR000014 -
Prci5g1551 406 PANTHER PROTEIN TWIN LOV 1 4 394 - -
Prci5g1551 406 NCBIfam PAS domain S-box protein 275 360 IPR000014 -
Prci5g1551 406 NCBIfam PAS domain S-box protein 22 128 IPR000014 -
Prci5g1551 406 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 361 IPR035965 -
Prci5g1551 406 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Prci5g1551 406 Pfam PAS domain 262 361 IPR000014 -
Prci5g1551 406 Pfam PAS domain 40 131 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1551 Prci-Chr5 34411613 34415954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1551 248 384 AGC Kinase Gene Family AT5G58140 41.727 6.11e-31 123