Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1550 ATGGAATCACAGTTGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGACTGACAATTTTATCATCACCGACCCCTCTATCTCTGGCCATCCGATTGTTTTTGCGAGCCATGGGTTCTTGAAAATGTCAGGCTATTCCAGAGCCGAGGTGATTGGCAAGAATGGTAGGATTTTTCAAGGAACAGGGACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCAATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGCAAACCTCTTTGGATTTTGTTTCACATGAGTCCTGTATTTAACAAGTATGATGGCAGGGTGAGTCACTTCGTTGCAGTTCAGGTTCCTCTATCGAGGAAACGGAGGCGTTCCGGATGTGACTTCAGGAGAACTGGTGTTAATTTGAGTGACGATGGGTCTAAGGCTCAGGATTTTGTGTACGGATCGTGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACCTGGTCATGTTTTGTCCCTTCATCAAGTGTCAGAAGTTGAACATGAGGAATCAAATGGTGAAGCACCGTGTGAGGCAAGCGATGTTGATAAGAGACAAGCCATGACTGCCATGGACAACATTTTTTCTGTTCTAACCCACTATAGTGAGTTGAGTGGCAGATTGGTTTGTAGAAAGAGATGCAGCATTTCTGACGGGGGTCTTCTTAGCTCATCGTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTTTACGCCAGTGATGCCTTCTTGAAATTAACAGGTTACGTAAAAGATGAAGTGCTGCGACGCAATTGTAGATTTCTAAGTGGACCGGATACTGATAGCTCAACTTTATATTTGATAAGGGATAGCATTAAATCTGAGCAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGATAGCCCATTTTGGAATTTTCTACATATATCGCCTATTCGTGATGCCTCTGGCAAGATAGCATACTTTGTGGGTGTTCAAGTAGAAGAAGGCAAAAACAACCAAGGTAGACACGGTCTCAGCCCTGAGAAGATTCAACTTAGCGTGGTTGGAGCAGTTAAGGTTGCTGTGAGGAGTTCATCAATGACTGCTGCATCTTCGAAGTCAAATACAGCATAA 1215 0.4305 MESQLGLIDQSFDSRYSCHVREALDELTDNFIITDPSISGHPIVFASHGFLKMSGYSRAEVIGKNGRIFQGTGTCRRSVIEIREAIREERPIQINLLNYRKDGKPLWILFHMSPVFNKYDGRVSHFVAVQVPLSRKRRRSGCDFRRTGVNLSDDGSKAQDFVYGSCRKEVCSDSLLEPGHVLSLHQVSEVEHEESNGEAPCEASDVDKRQAMTAMDNIFSVLTHYSELSGRLVCRKRCSISDGGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYVKDEVLRRNCRFLSGPDTDSSTLYLIRDSIKSEQPCTVRILNYRKDDSPFWNFLHISPIRDASGKIAYFVGVQVEEGKNNQGRHGLSPEKIQLSVVGAVKVAVRSSSMTAASSKSNTA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1550 404 NCBIfam PAS domain S-box protein 22 128 IPR000014 -
Prci5g1550 404 NCBIfam PAS domain S-box protein 273 358 IPR000014 -
Prci5g1550 404 PANTHER PROTEIN TWIN LOV 1 4 392 - -
Prci5g1550 404 SMART pac_2 323 364 IPR001610 -
Prci5g1550 404 SMART pac_2 93 136 IPR001610 -
Prci5g1550 404 Pfam PAS domain 260 359 IPR000014 -
Prci5g1550 404 Pfam PAS domain 40 131 IPR000014 -
Prci5g1550 404 CDD PAS 27 130 IPR000014 -
Prci5g1550 404 ProSiteProfiles PAC domain profile. 320 374 IPR000700 -
Prci5g1550 404 SUPERFAMILY PYP-like sensor domain (PAS domain) 263 359 IPR035965 -
Prci5g1550 404 CDD PAS 269 358 IPR000014 -
Prci5g1550 404 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Prci5g1550 404 ProSiteProfiles PAS repeat profile. 273 319 IPR000014 -
Prci5g1550 404 FunFam Protein TWIN LOV 1 isoform D 30 224 - -
Prci5g1550 404 FunFam protein TWIN LOV 1 260 396 - -
Prci5g1550 404 Gene3D PAS domain 260 403 - -
Prci5g1550 404 Gene3D PAS domain 30 152 - -
Prci5g1550 404 SUPERFAMILY PYP-like sensor domain (PAS domain) 30 130 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1550 Prci-Chr5 34411612 34415954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1550 246 382 AGC Kinase Gene Family AT5G58140 41.727 5.62e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1550 - - jre:108989811 525.783