Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1530 ATGGGAAAAATAAACAGAAATAGTCCCTTATTTTCTTTCTTTTTCTTGATCTATTGGGTAGCCATTCCTACCCTCCATGCAAATGTGTTAGAGAATGAAACGTATTGGAAAGGGCATGCCAGTGAATTTGATCAGTATTGGCATGAAAGAGCCAACGAAGCTGAAAAAGTCAACAAGGAAGAATTTCAACCTAACCCCTATGATGTCGTAGGCAACCTCACCGCTAGTGTTGATAGAATGCTGCTTAGCACAGGGGATGAAGGGAGGAACTTGAGACAGCGTATTGGCCTTCATGAAGGTCCATGCTTGGCAACCAATCCAATTGACAGGTGCTGGAGATGCGATCCCAACTGGGCGAACAACCGCCAGAAGTTGGCTGATTGTGCACTAGGCTTTGGGAAAGGCACAACTGGTGGAAAGGGTGGTCGTTACTATGTGGTAACAGATCCCTCAGATAATGATATGCTTAATCCCAAAGAAGGTACCCTTAGGCATGCAGTTACAAGGAACGGTCCTTTGTGGATTATCTTTCAACGCAGCATGGTGATTAAGCTGCAGCAGGAGCTGATTATGAGTGGGGATAAGACCATTGATGGCAGAGGAGCTAATGTTATAATCACCGGAGGGGCTGGCATTACCATCCAGTTTGTCAAGAATGTGATCATTCATAACATTAAGATCTTCAACATAGTGTCTACCAGTGGTGGACTGATTAGAGATAGCGAAGACCATTTTGGTTTGAGGACAAGGAGCGATGGTGATGGTATTTCAATCTTTGGCTCCAGCAAAATCTGGATTGATCATGTCTCCATGAGCAATTGCCAAGATGGACTCATAGATGCCATTATGGGATCCACTGCCATCACCATCTCCAACGGCCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGCGCCAGTGACAGCTATGCAGGAGACCAGATTATGCAAATCACAGTGGCATTCAATCACTTTGGTCAGGGACTAATCCAAAGGATGCCGAGATGCAGGTGGGGTTTCGTTCATGTGGTTAACAATGACTACACTCATTGGGAAATGTACGCCATTGGTGGCAGCCAGCATCCTACCATCATCAGTGAGGGTAACAGATTCATAGCCCCGAATAACATGTTTGCCAAAGAGGTGTGCAAGAGAGAGTACTCACCACAGGAAGTGTGGAAGAACTGGCAATGGAGATCAATCAACGACCTCCTCATGAACGGAGCGACGTTCGCAGAATCTGGGACTCAGCTTCCGGTGGGGACGCGTGACATGCTCAAGGGCAAGCCTGGATCATACGTCTCAAGACTCACACGCTTTTCCGGAATGCTCAAGTGCAGAGTGGGTCGGCCCTGCTAA 1359 0.4673 MGKINRNSPLFSFFFLIYWVAIPTLHANVLENETYWKGHASEFDQYWHERANEAEKVNKEEFQPNPYDVVGNLTASVDRMLLSTGDEGRNLRQRIGLHEGPCLATNPIDRCWRCDPNWANNRQKLADCALGFGKGTTGGKGGRYYVVTDPSDNDMLNPKEGTLRHAVTRNGPLWIIFQRSMVIKLQQELIMSGDKTIDGRGANVIITGGAGITIQFVKNVIIHNIKIFNIVSTSGGLIRDSEDHFGLRTRSDGDGISIFGSSKIWIDHVSMSNCQDGLIDAIMGSTAITISNGHFTKHNEVMLFGASDSYAGDQIMQITVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWEMYAIGGSQHPTIISEGNRFIAPNNMFAKEVCKREYSPQEVWKNWQWRSINDLLMNGATFAESGTQLPVGTRDMLKGKPGSYVSRLTRFSGMLKCRVGRPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1530 452 SUPERFAMILY Pectin lyase-like 106 442 IPR011050 -
Prci5g1530 452 PANTHER PECTATE LYASE 18-RELATED 55 450 IPR045032 GO:0030570
Prci5g1530 452 SMART amb_all 180 377 IPR002022 -
Prci5g1530 452 Gene3D - 105 445 IPR012334 -
Prci5g1530 452 Pfam Pectate lyase, N terminus 40 83 IPR007524 GO:0030570
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 152 177 IPR018082 -
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 252 273 IPR018082 -
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 128 145 IPR018082 -
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 188 204 IPR018082 -
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Prci5g1530 452 PRINTS Pollen allergen Amb family signature 354 373 IPR018082 -
Prci5g1530 452 Pfam Pectate lyase 191 371 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1530 Prci-Chr5 34274209 34276489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1530 4 452 Polysaccharide Lyase AT1G14420 55.914 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1530 K01728 - gmx:100798579 623.239