Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1525 ATGATTTCCTATGAAATTTACTCCTTCCGTGCTCCATTTCAAGTTCTGAGGTTCTCTAAATGGAAGCGAACGAATGCGCGGTTCTTGATTTTTCTCCCTTCGAAGACCAAGAGGAGCTTCTTCCCATGCATCGTTTGTAGCGATGAATCCTTCTCGTTGCCAGCCCCAAAACAGTCGGGTTATAGTCCTCCTGAGGAATTGTTCGGTCTCGATGTGGAACTCAAGCCGAGCAATGGCAGTTCCCAAACATCGGAACCAAGGTCGTGGTTTGGTCCAAATGGACAGTACATCAGAGAGTTACCTTGTCCGAGCTGCCGGGGAAGGGGTTATACTCCCTGCACAGAGTGCGGGATTGAAAGATCAAGATCAGACTGTCCGAAGTGTAGTGGGAAGGGTATTGTTACTTGCCACCAGTGTTCAGGAGCTCGTGTTACTTGGGAAGAATCCATTGATGAAAGGCCATGGGAAAGAGCACGTTCTATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTAGACATAAAGTTGGATGTGAAGAAAAAATCAAAGCGTGTTTACCAGTCACCACCTCCTGAAGTTGGCTTGAAGATTAGTCGTTCATTAAAAGATCTCAATGCAAAAACTGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCATGCGCAGAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGATTCAGCTAGAAAGCACGCCTCTGAAACCATGAAAGTTTTCTTTAGTAACCCAGAAAATCGTCATAAAAGGAGCATTGCCATGAAAGGAGTAAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCACAGGCGACACTACTGTCCAGAGCTGAAGGATAGTTTGATGGGGCGGCAATTCACGTGCCGGCTATGCGGGGGAAAAGGCCATAACAGAAGAACATGCATCAAGTTAAGGATAGACCATCGGAACGGCAGACCTGTAAAACTTTATCGCTGCAAAATTTGTCGTCGATATGGCCATAATCGCAGGACCTGCCCTCAGCTAGTTGGTACCTCCAAAACGACAGCTTCTTTGAGACCATACAAGTGTAGTTTGTGCCGCGGGAGTGGGCACAATATCAGGACATGTCCTCGTACGAGAGCTATTCCTCAACATGCTCAAGATTGA 1173 0.4612 MISYEIYSFRAPFQVLRFSKWKRTNARFLIFLPSKTKRSFFPCIVCSDESFSLPAPKQSGYSPPEELFGLDVELKPSNGSSQTSEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCSGKGIVTCHQCSGARVTWEESIDERPWERARSISPLKVKEDDEVDNLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKSKGTDSARKHASETMKVFFSNPENRHKRSIAMKGVNFFCQNCGREGHRRHYCPELKDSLMGRQFTCRLCGGKGHNRRTCIKLRIDHRNGRPVKLYRCKICRRYGHNRRTCPQLVGTSKTTASLRPYKCSLCRGSGHNIRTCPRTRAIPQHAQD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1525 390 ProSiteProfiles Zinc finger CCHC-type profile. 276 291 IPR001878 GO:0003676|GO:0008270
Prci5g1525 390 SMART c2hcfinal6 302 318 IPR001878 GO:0003676|GO:0008270
Prci5g1525 390 SMART c2hcfinal6 275 291 IPR001878 GO:0003676|GO:0008270
Prci5g1525 390 SMART c2hcfinal6 333 349 IPR001878 GO:0003676|GO:0008270
Prci5g1525 390 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Prci5g1525 390 Gene3D - 267 319 - -
Prci5g1525 390 Gene3D - 330 389 - -
Prci5g1525 390 SUPERFAMILY Retrovirus zinc finger-like domains 322 353 IPR036875 GO:0003676|GO:0008270
Prci5g1525 390 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 99 147 IPR036410 -
Prci5g1525 390 SUPERFAMILY Retrovirus zinc finger-like domains 273 318 IPR036875 GO:0003676|GO:0008270
Prci5g1525 390 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 326 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1525 Prci-Chr5 34245899 34251296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1525 8 379 C2H2 Transcription Factor Family AT5G20220 58.883 3.21e-155 442