Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1523 ATGTCGCAGCTTCACTATCTATCTTCTTCTTCCTCACTCACTATACAGTGCTCAATTCAACTCTGCCCTCCCCACAGTTTCTATCCAAAGGCCCTTTCTTTTAGCCGTTCTTCCACGTCCAGTGGCTCCAACTTCTCCCTCACCCTCCCATCCTCCCGCAGAAACCCATTGTCTATCAAATGCCGCCAATCCGAGTTCTTCGAACAACAAAGCTTAGTCAGACCCATAAGAAATGGAAACGGAAGCGATGCAGTTGGAGCTCTGCCGCCTAGGGTTTATGTGGGTCACTCGATTTACAAAGGGAAGGCTGCGCTTACGGTGACTCCCAGGCCTCCAGAGTTTTCTTCATTGGACTCAGGGGCATTTAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTTGCTCCTGCAATTGGCATGCGCCAATATGACTGGAATAGAAAGCAGGTATTCTCTCTATCAGTGGGTGAAATGGGAAATCTAATTAGCCTTGGTGCAAGGGATTCTTTTGAATTTTTTCATGATCCTTTTAAGGGGAAGAGCGATGAAGGTAAAATTAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGTCACTTTTTCAACTTAAGTGTTCAAAACAAGATTGAGAACGTGGATGAAAGCATCTATATCCCTGTTTCCAAAGCAGAGCTATCAGTTCTCAACTCAATTTTCACTTTTATCTTGCCGTACCTTCTGGGTTGGCATGCGTTTGCAAATTCTATAAAACCAGAGGATCAAAGCCGATTGAATAATGCCAATCCAAGATATGGGGGAGACTATGAATGGAACAGATAG 825 0.4461 MSQLHYLSSSSSLTIQCSIQLCPPHSFYPKALSFSRSSTSSGSNFSLTLPSSRRNPLSIKCRQSEFFEQQSLVRPIRNGNGSDAVGALPPRVYVGHSIYKGKAALTVTPRPPEFSSLDSGAFKVSREGYVLLQFAPAIGMRQYDWNRKQVFSLSVGEMGNLISLGARDSFEFFHDPFKGKSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKIENVDESIYIPVSKAELSVLNSIFTFILPYLLGWHAFANSIKPEDQSRLNNANPRYGGDYEWNR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1523 274 Gene3D Transcriptional Coactivator Pc4; Chain A 85 262 IPR009044 GO:0003677|GO:0006355
Prci5g1523 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 64 274 IPR013742 GO:0003697|GO:0006355|GO:0006952
Prci5g1523 274 Pfam Whirly transcription factor 98 232 IPR013742 GO:0003697|GO:0006355|GO:0006952
Prci5g1523 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 90 274 IPR009044 GO:0003677|GO:0006355
Prci5g1523 274 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 83 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1523 Prci-Chr5 34232504 34235919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1523 45 274 Whirly Transcription Factor Family AT1G14410 67.811 4.74e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Prci5g1523 Whirly 7e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1523 K26559 - pcin:129310571 539.65