Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1503 ATGGATTTCTTTCCGGCAAATTTCATATTACAGAACCCTCACCAAGAAGTAGACCACCATCAACCTCCACCGTGTCTCAACTCAATTCTGCCTCAAGATTATCATGGAGGAGCGTCACTTCTAGGGAAGAGATCTATGACTTTTTCAGGACTTGAACTTGGCGGTGAAGAAGCAAATAATGGTGAAGAAGACATGTCTGATGATGGATCTCAGGCTGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAAACACTTGAGAAGAGCTTTGAGCTAGGAAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGGCTGCAGCCTAGGCAGATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACGAAGCAGCTGGAGAAAGACTATGATCTTCTCAAAAGGCAGTATGAAGCTGTCAAAGCAGATAATGATGCCCTTCAAGCTCAAAACCAACAACTTCAAGCAGAGATATTGGCACTGAAAAGCAGAGAAGTGCCAACTGAATCCATCAACCTCAATAAGGAAACGGAGGGATCTTGCAGCAATCGGAGTGAGAATAGCTCAGACATCAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTCTATCCACTCATCAAATTACAAGCAGAACCTTGTTCCCATCAACATCTAATTCTGCTAGGCCTGCTTCCGGAGTGGCTCAGCTTTTTCAAACCTCTTCAAGACCAGACCTTCAGTGCCAGAAGATTGATCATATGGTCAAAGAAGAGAGCTTGAGCAACATGTTTTGTGGGATTGATGACCAGACAGGGTTCTGGCCTTGGTTGGAGCAGCAACATTTCAATTGA 855 0.4503 MDFFPANFILQNPHQEVDHHQPPPCLNSILPQDYHGGASLLGKRSMTFSGLELGGEEANNGEEDMSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADNDALQAQNQQLQAEILALKSREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQITSRTLFPSTSNSARPASGVAQLFQTSSRPDLQCQKIDHMVKEESLSNMFCGIDDQTGFWPWLEQQHFN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1503 284 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Prci5g1503 284 Gene3D - 67 136 - -
Prci5g1503 284 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Prci5g1503 284 Coils Coil 122 170 - -
Prci5g1503 284 FunFam Homeobox-leucine zipper protein ATHB-13 67 134 - -
Prci5g1503 284 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Prci5g1503 284 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Prci5g1503 284 CDD homeodomain 75 131 IPR001356 GO:0003677
Prci5g1503 284 SMART HOX_1 73 134 IPR001356 GO:0003677
Prci5g1503 284 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Prci5g1503 284 MobiDBLite consensus disorder prediction 176 197 - -
Prci5g1503 284 MobiDBLite consensus disorder prediction 53 78 - -
Prci5g1503 284 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Prci5g1503 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 219 IPR045224 GO:0003700
Prci5g1503 284 SUPERFAMILY Homeodomain-like 65 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1503 Prci-Chr5 34105446 34107422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1503 1 284 Homeobox Transcription Factor Family AT1G69780 62.500 8.75e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci5g1503 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1503 K09338 - gmx:100814080 447.203