Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1500 ATGTCTAACAGAAGATCTCGTTCCAGACACCCAGGTTTTAACTCCACTGATCTCAGTGATGCCCAGATCCACGATCTCGTCTCCAAGTTACAACGCCTTATTCCCCAGCTTCAACCCCCTCTCACCTCCCACCAGGTATCAGCAGCTAAGGTGTTGAAGGAGACTTGCAACTACATAAAGAAGTTGCACAGAGAAGTTGATGATCTCAGTGACAGATTGTCCGAGCTTTTGGCCACCACTGACCCCGACAGCACCGAAGCAGCCATTCTCAGGACCTTGCTAATGTGA 288 0.4965 MSNRRSRSRHPGFNSTDLSDAQIHDLVSKLQRLIPQLQPPLTSHQVSAAKVLKETCNYIKKLHREVDDLSDRLSELLATTDPDSTEAAILRTLLM 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1500 95 Gene3D - 21 90 IPR036638 GO:0046983
Prci5g1500 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 62 IPR011598 GO:0046983
Prci5g1500 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 82 IPR036638 GO:0046983
Prci5g1500 95 Coils Coil 59 79 - -
Prci5g1500 95 PANTHER TRANSCRIPTION FACTOR PRE 1 95 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1500 Prci-Chr5 34092448 34094881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1500 1 95 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 53.684 3.70e-28 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1500 - - csv:101221116 116.316