Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1497 ATGGCTGATCTTCAGAGAACGGTTTTTGGTGATAGGAATATCGAACAGGCAGTTACATCTCTTAAGAAAGGTGCATATCTACTAAAGTATGGACGTAGGGGGAAGCCAAAGTTCTGCCCATTTCGGCTTTCCAGTGATGAATCTCTGCTCATATGGTATGCTGGAAAGGATGAGAAACAGCTAAAGCTCAGTGCTGTTTCAAAAATCATTCCTGGGCAGCGAACTGCCATATTTCAGCGGTATCCTCGGCCTGAAAAGGAGTATCAATCATTTTCACTTATATACAATGAAAGGTCCTTGGATTTGATTTGTAAGGACAAGGATGAAGCTGAAACCTGGTTTGTTGGTCTGAAGGCATTAATTACTCGTGGTCATGATCACAAATGGAGGTGTGAATCAAGAAGTGAAAGTGCTTGTTCTGATAGTCCACAGCATCACGCCCGAAGAAATTCTCCATCAATTGCACCATTTGACCTGGTAGATGCTGAAGAATGTTCTTTTGACAGTACTTCAGAAAATAGATTGGGGAAGGCTTTCTCTGAAATTATTTCATATACTGCAGCTGGTGCAAGTCCTTGTCAAGCTGAATCCAATGCAAATTCCTCTGTGTCTCCTGGGTCTGGGGATAACTCAAACAACCGAAATTCTGCTGCTGAGCCAGTTCGAGTTAGTTTATCAAGTGCTGTAAGTTCATCCAGCCACAGCTCTTACCAAGAAGATTTTGATGCTATAGGTGATGTTTTTATTTTTGGAGAAGGTATTGGTGATGGAGTCCTTGGTGGTGGTTTGCATAGACTTGGAACTTCATCTGGTTCTGAGATGGATGCATTTCTTCCTAAGGCATTGGAATCAAAAGTAGTTCTGGATGTTCAGAGCATTGCTTGTGGCTACAAACATGCTGCTCTAGTTACCAAGCAAGGAGAGGTATATAGCTGGGGGGAGGAATCAGGAGGCAGGCTAGGGCATGGTGTAGAAGTGGATGTTTCTCACCCTAAAGTCATCGACACTCTTAGTGGCGCAAATATTGAATTAGTAGCATGTGGAGAGTATCACTCTTGTGCTGTCACATTTTCTGGGGATCTTTATACCTGGGGTGATGGCATTCACAATTCTGGATTACTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACATGGAAGGCATACATGTATCCTATGTATCTTGTGGACCTTGGCACACAGCGATTGTGACATCTTCTGGCCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCTAGGAGATCTTAGTAGCACAAATACTCCTAGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTCTCCTGTGGTGTTTGGCACACTGCTGCTGCTGTTGAGGTGGCAACTGAATCTATGGAATCTTCTAGACACTCTAGAGGAAAACTGTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGGTGATAGCGAGCCTAGACTAGTTCCCCAATGTGTTATTGCATTGGATAATCAAAATATTTGTCAAGTGGCTTGTGGTCACAGCCTCACTGTTGCTTTAACAGCCTCAGGACGTGTATATACAATGGGCCATACTGCTTATGGGCAACTTGGCAATCCTGCAGCTGATGGAAAGTTCCCTACACAGGTTGAAGGTAAGATTGGTGGTAGTTTCATAGAAGATATTGCCTGTGGTTCATATCATATTGGAGTCCTGACTTCCAAAGCAGAGGTTTACACCTGGGGAAAGGGTTCGAATGGGCAGCTAGGCCATGGAGACAGTGGTCACCGAGATACACCTACACTCGTTAAGTTTTTTAAAAATAAGCAGGCGAGGAGTATTGTTTGTGGCTCAAACTTTACTGCTGTTATATGTCCTCATAAATGGGTATCAAGTGCTGACCATTCTGTGTGTTCTGGTTGTCACAATCCTTTTGGATTCAGAAGAAAACGCCATAATTGCTACAACTGTGGACTTGTTTTTTGCTCAGCATGCAGCAGTGGAAAATCTACTAAAGCTTCTCTTGCTCCAACTTCAAACAAGCAATATCGTGTTTGCGGTGACTGTTATTCTAAACTTAAGAAGACCACAGAATCTGTTTCCTTGACAAAAACTTTTACATTGAAAAATTTGCCTGACTCTTGGGCTAGTAAATTGCAGGGAAAGCTATTAAGGCTTTCATCTTTTGGCTCTAATGTTCAAGCAGGAAGCAGGCCCTCAAAGATCCCAGGATCACATCATACCCATGTTTTTCCAGCTCTGAATGGAAAACTACAGTTGGGGGGATTCAGTCCTCTAAATGCATCAAATTCTGTTCCTGGAGCATCAGAGAAGCCCCTGTCAGTTTCTGTGCCTGCAAGTGGTTTGAACTCTGAAGTGTCATCTCCAGTTTCAGAAAAGTTGAGTCCACGATGGTCTTCTGAAGAAGTTCATGATGATTCAAAGAACAGAAACAGCGTTTTAAGTCACAGTGTTTTAAGTCAGGAGGTTATAAGTTTAAGGGCACAGGTTGAAAATCTTACTCTTAAATCGAAGCATCTTGAGGCTGAACTTGAGAGGACATCAAAGCAGTTAAAGGAAGTGACTGCAGTAGCAGCAGAAGAAGCTGAGAAGTGTAAATCTGCTAAAGAGGTTATAAAGTCATTGACTGCTCAGTTGAAGGAAATGGTACAAAGAGTGCCAGATGGAGGTCTTGGGAACTCAAATGCCGACTTCTCTGCTGAAATTACCACTAATATTCTAAATCAGTCTTTAAATGAGTGCCATATAACGAACAGTACCATTCCTGAATCTGAGTCGATCAGCAATGCAGAAAATCGGATAATGCCTGATATTTCCAAAGCACAAAGTGGAAAATCAGAGTGGGTGGTTCAAGATGAACCGGGTGTATACATAAGTTTGTCCTCCTTGCCAGGTGGTGGTAATGAACTTAAACGTGTGCGTTTCAGTCGGAAACATTTCACAGAACAGGAAGCTGAAAAGTGGTGGGCTGAAAATGGGACCAAAGTATTGGAGCGGCACAGTGTAGTCGCTACATAG 3057 0.4292 MADLQRTVFGDRNIEQAVTSLKKGAYLLKYGRRGKPKFCPFRLSSDESLLIWYAGKDEKQLKLSAVSKIIPGQRTAIFQRYPRPEKEYQSFSLIYNERSLDLICKDKDEAETWFVGLKALITRGHDHKWRCESRSESACSDSPQHHARRNSPSIAPFDLVDAEECSFDSTSENRLGKAFSEIISYTAAGASPCQAESNANSSVSPGSGDNSNNRNSAAEPVRVSLSSAVSSSSHSSYQEDFDAIGDVFIFGEGIGDGVLGGGLHRLGTSSGSEMDAFLPKALESKVVLDVQSIACGYKHAALVTKQGEVYSWGEESGGRLGHGVEVDVSHPKVIDTLSGANIELVACGEYHSCAVTFSGDLYTWGDGIHNSGLLGHGNEVSHWIPKKVSGNMEGIHVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGLGDLSSTNTPREVETLKGLRTTRVSCGVWHTAAAVEVATESMESSRHSRGKLFTWGDGDKGQLGHGDSEPRLVPQCVIALDNQNICQVACGHSLTVALTASGRVYTMGHTAYGQLGNPAADGKFPTQVEGKIGGSFIEDIACGSYHIGVLTSKAEVYTWGKGSNGQLGHGDSGHRDTPTLVKFFKNKQARSIVCGSNFTAVICPHKWVSSADHSVCSGCHNPFGFRRKRHNCYNCGLVFCSACSSGKSTKASLAPTSNKQYRVCGDCYSKLKKTTESVSLTKTFTLKNLPDSWASKLQGKLLRLSSFGSNVQAGSRPSKIPGSHHTHVFPALNGKLQLGGFSPLNASNSVPGASEKPLSVSVPASGLNSEVSSPVSEKLSPRWSSEEVHDDSKNRNSVLSHSVLSQEVISLRAQVENLTLKSKHLEAELERTSKQLKEVTAVAAEEAEKCKSAKEVIKSLTAQLKEMVQRVPDGGLGNSNADFSAEITTNILNQSLNECHITNSTIPESESISNAENRIMPDISKAQSGKSEWVVQDEPGVYISLSSLPGGGNELKRVRFSRKHFTEQEAEKWWAENGTKVLERHSVVAT 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Prci5g1497 1018 SUPERFAMILY PH domain-like 14 121 - -
Prci5g1497 1018 Pfam Transcription factor regulating root and shoot growth via Pin3 958 1013 IPR013591 -
Prci5g1497 1018 CDD PH_PLC_plant-like 12 122 - -
Prci5g1497 1018 Pfam Transcription factor BRX N-terminal domain 873 900 IPR027988 -
Prci5g1497 1018 CDD FYVE_like_SF 644 696 - -
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Prci5g1497 1018 Gene3D - 13 128 IPR011993 -
Prci5g1497 1018 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Prci5g1497 1018 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Prci5g1497 1018 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Prci5g1497 1018 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Prci5g1497 1018 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Prci5g1497 1018 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Prci5g1497 1018 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Prci5g1497 1018 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 467 - -
Prci5g1497 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 707 IPR013083 -
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Prci5g1497 1018 SUPERFAMILY FYVE/PHD zinc finger 634 709 IPR011011 -
Prci5g1497 1018 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Prci5g1497 1018 SMART fyve_4 632 701 IPR000306 GO:0046872
Prci5g1497 1018 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 891 - -
Prci5g1497 1018 Gene3D - 180 369 IPR009091 -
Prci5g1497 1018 Gene3D - 370 467 IPR009091 -
Prci5g1497 1018 Gene3D - 468 646 IPR009091 -
Prci5g1497 1018 Coils Coil 836 898 - -
Prci5g1497 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 583 630 IPR000408 -
Prci5g1497 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Prci5g1497 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Prci5g1497 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 413 461 IPR000408 -
Prci5g1497 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 478 526 IPR000408 -
Prci5g1497 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 529 576 IPR000408 -
Prci5g1497 1018 MobiDBLite consensus disorder prediction 778 823 - -
Prci5g1497 1018 MobiDBLite consensus disorder prediction 193 222 - -
Prci5g1497 1018 ProSiteProfiles BRX domain profile. 959 1014 IPR013591 -
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Prci5g1497 1018 MobiDBLite consensus disorder prediction 778 808 - -
Prci5g1497 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Prci5g1497 1018 Pfam FYVE zinc finger 634 700 IPR000306 GO:0046872
Prci5g1497 1018 SUPERFAMILY RCC1/BLIP-II 245 635 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1497 Prci-Chr5 34024817 34035161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1497 950 1015 Major Intrinsic Protein MIP AT1G31880 48.485 9.47e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1497 - - qsa:O6P43_033034 1382.08