Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1449 ATGGACTTGACCTCCGCCACCGTCACCGGCCCCTTGGATTCTCTGCACTCTGCAAACCCACCACTTGCCCACCCCACCAGCACCACCAAATCTCTGTCTTTCACCAACGGCTCCCTCAAGCGCCACCACCCTTCGGCTCATCCGCCACCTCCTGCGGTAGTTTCCTACAAGGAATGCCTCAAGAACCACGCCGCCAGCATCGGCGGCCACGCGCTTGATGGTTGCGGCGAGTTCATGCCCTCCTCCGCCTCCAACCCCAGTGACCCGCGGTCCCTCAAATGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGTGACCCCCAAGAGCTTCTTTACTCCAGCCCCAACTTCTTAAGCTGCTTCTATCCCCCGCTTCCCCCGCCGCCTCCGCCGCCGCTAGCTCCTCGGGGGTTAAGCCCCAGCACCAGCCCGAGCATGAGCCCCAGCTCAAGCCCGAGCAGCACCAGTCCGAGCCAGTTGTCAAGCCCGTCGCCGCCGCCGGTGTCGCATTTCCCTCCTCCTTACCCCACATCGGCACCGCACATGCTGATCGCACTCGGCAACGCTTATTCTGGTCCGTCCGATGAGCAGCATCGGAGTAGCTTCATGAATTCCTCAGCGATGAAGGTGGAGGAGAGCCCGGGTGGGAGAAAGAGGCACAGAACGAAATTCAGCCAAGAGCAGAAGGAGAAGATGTTTCATTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGAGATGATAGAACGGTACAAGATTTCTGCAACGAGATTGGGGTCTCTAGAGGAGTGTTCAAGGTTTGGATGCACAACAACAAGAATACTTTCAGGAAAAAATCAGAAATCGGAAATACCCAAACTGAGAAAGTTACCAATGAAGGTGATGACTGTGCAGCTGGTAATAATAATCGAGGGATGTTCCGTTTCATTCATCTTTCTCTTGTTAGTAGATCTCTGAGCGCCGTCTCAATCTGA 978 0.5613 MDLTSATVTGPLDSLHSANPPLAHPTSTTKSLSFTNGSLKRHHPSAHPPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSASNPSDPRSLKCAACGCHRNFHRRDPQELLYSSPNFLSCFYPPLPPPPPPPLAPRGLSPSTSPSMSPSSSPSSTSPSQLSSPSPPPVSHFPPPYPTSAPHMLIALGNAYSGPSDEQHRSSFMNSSAMKVEESPGGRKRHRTKFSQEQKEKMFHFSEKLGWRMQKGDDRTVQDFCNEIGVSRGVFKVWMHNNKNTFRKKSEIGNTQTEKVTNEGDDCAAGNNNRGMFRFIHLSLVSRSLSAVSI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1449 325 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Prci5g1449 325 MobiDBLite consensus disorder prediction 1 52 - -
Prci5g1449 325 MobiDBLite consensus disorder prediction 189 229 - -
Prci5g1449 325 FunFam Zinc-finger homeodomain protein 2 204 279 - -
Prci5g1449 325 Gene3D - 203 280 - -
Prci5g1449 325 MobiDBLite consensus disorder prediction 213 229 - -
Prci5g1449 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Prci5g1449 325 MobiDBLite consensus disorder prediction 132 177 - -
Prci5g1449 325 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Prci5g1449 325 MobiDBLite consensus disorder prediction 140 159 - -
Prci5g1449 325 SUPERFAMILY Homeodomain-like 205 279 IPR009057 -
Prci5g1449 325 MobiDBLite consensus disorder prediction 194 209 - -
Prci5g1449 325 MobiDBLite consensus disorder prediction 160 177 - -
Prci5g1449 325 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Prci5g1449 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 276 - -
Prci5g1449 325 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1449 Prci-Chr5 33764820 33766614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1449 1 285 ZF-HD Transcription Factor Family AT5G15210 43.206 9.96e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci5g1449 ZF-HD_dimer 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1449 - - gmx:102660309 308.916