Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1448 ATGAGCGATCATCTGGTTGTGTGTGTTGACCGTCTTCTACGGCCCGCGGCCGCTGACCCGGTCTCTCATCCGGCTGAGGTCCCGTCTGCGGATGTGGCGGGATCTTCTGGTTCTGCCCCGGTGGTGGATGATGAGACGAGGTCTGAACATGATGAGGATTGTAATGAGGATGAGCCACTTATCCAGATGGCTGAGTGTCGCATTTGTCAAGAGGAGGATGGCATTAAGAATCTGGAGACTCCTTGTGCATGCAGCGGCAGTCTGAAGTTTGCTCACAGAAAGTGCGTTCAACATTGGTGCAATGAAAAGGGAGATATAATTTGTGAGATATGTCATCAGCCTTATCAGCCTGGTTATACTGCCCCACCACCTCGCCCTCAACCTGAAGAAACTACAATTGATATAGGTGGGGGCTGGACAATCTCTGGCGCACCTTTGGATTTGCGTGATCCTCGACTGTTGGCAATTGCTGAGGCAGAACGCCAATACTTGGAAGCTGAATATGATGACTATGCTGCTTCTAATGCCAGTGGAGCTGCTTTTTGCCGCTCAGCTGCTCTAATTCTAATGGCTCTTTTACTCCTGCGGCATGCACTTTCAGTTACAGATTCTGATGCTGATGAGGATCCATCTACTTTTTTTTCCCTTTTCTTGCTTAGAGCAGCCGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCGGCAGCATTGGCAGCGACCCAAGTTGCTTTTGTATTACAATCGGGACAGCGCAGGGGGCTGCAGTTTGCCATAGCACCAGCGGGACCCACACTGAATCCACAACAGGAGCATGTGTAG 858 0.5012 MSDHLVVCVDRLLRPAAADPVSHPAEVPSADVAGSSGSAPVVDDETRSEHDEDCNEDEPLIQMAECRICQEEDGIKNLETPCACSGSLKFAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGAPLDLRDPRLLAIAEAERQYLEAEYDDYAASNASGAAFCRSAALILMALLLLRHALSVTDSDADEDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPAGPTLNPQQEHV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1448 285 MobiDBLite consensus disorder prediction 19 55 - -
Prci5g1448 285 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
Prci5g1448 285 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Prci5g1448 285 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 245 IPR033275 -
Prci5g1448 285 Pfam Protein of unknown function (DUF3675) 117 235 IPR022143 -
Prci5g1448 285 CDD RING_CH-C4HC3_MARCH 66 112 - -
Prci5g1448 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 117 IPR013083 -
Prci5g1448 285 FunFam RING/FYVE/PHD zinc finger protein 54 122 - -
Prci5g1448 285 Coils Coil 154 174 - -
Prci5g1448 285 SMART ringv_2 65 112 IPR011016 GO:0008270
Prci5g1448 285 SUPERFAMILY RING/U-box 64 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1448 Prci-Chr5 33736703 33740190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1448 65 112 C3H Transcription Factor Family AT2G37950 43.137 6.67e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1448 - - gmx:100812998 436.417