Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1447 ATGGAAGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTTCCCATGCGGCAAGTCTCTGGGAGGACACATCAGAACTCATATGAGCATTGAACATACATCACCTCAATCCAAGGAAGTTAGGAACAATGCCGATGATGGTGTCGTCAAGTTCGATGGTGGAAGGAAGCGGAAGAGAGATTTTGGGTCTGAAGAAGCTGCTTCTGGAAACCTCATTTATGGTCTCAGAGACAACCCCAAACAAACAACTAGGCTCGCAAGATCCAACGCTGCTGTACAGAAACAAAGGTTTTGCAAAGAATGTGGGAAAGGCTTTCTGTCTCTAAAAGCTCTGTGTGGCCACATGGCTTGTCATTCGGAGAAAGATAAAGGGACGACGACCAAGTTTGAGAACAATTCTGGGTTTAGCGTGAAGCAGAAGATGTTGATGATGGATAGCCAATCGGACACAGAGACTTCTGCTCCGAATTATCCTAGGAGATCCGGAAGAATGAGGTTCAAGACAGTGAATTCTAAGACAAATGATCACCCTTCCTCTGTTCCTCTGGCGAATGGTTCTTCCCCTGTGTCTGAGGTAGAGCAAGAACAAGAAGAGGTTGCCAGGTGTTTGATGTTATTGTCCAAAGACTCTACCTATAGGGATCGTTTCGTTTTGCCTACTGAGTCTTGGGACACGAGAATTACTTCAAAAAATGGTAAAAAAAGCTCTGTGTCTAATGGTTTTGAGATCGTGGAGGACAAGAGGAAGGTGGTGCTGTGTAAGAACATGAAGTTGAAGTCTGCTGAGATTGTTGATTCTGATAATTCAGGTTCTGGGTATTTCAGAAATGGTCCCAGAAAGTTGGATTTGGATGTAACAGTCGATAAGTATACCGGGAATGGAGAATTCAAGACACCAAAAGTTGCAGACAGGTCTGAGTCTGAGTTTGCTCAGAACTATGACACTGAATCTAGGAAGATGTTAATCAAGAACAGAGGAACCAGAAGCATTGAACCCAGAAAACTAATTTTGGAGGATATGGACTGTGATACAACAGATAGAGCGACAAAGGAACAATTCATCAATTGGAAAAAGAGAACAAGCTGTAATTCTCTTTGCCAACAAAATTCAATTGGTGTTTCTTGCAAAAAGACACCAAACGGTTTTCACAGTGAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAACTATCAGCGGCTCTTATGATTCAGCATATGATGAGAGTGACGAGAGCAGTACGGACACAGATGCTTATCCTTCTCCATTGCCTCCTAGCAGCAAGGTCATCAATGGAAAGAAGACCAGCAAGTCCAAGAAGAAATTGAAGTCAAAGAAAAGCAGAGAACATAGATGCCCCATCTGCTACAGAATTTTCAAGTCAGGCCAAGCATTAGGTGGTCATAAAAGGTCTCATTTTGTTGGAGGTTCTGAAGAGAACACACTAGTGATCAAACAAGGTTCTCCTGTTGTTCCATGCCTGATTGATCTCAATCTTCCTGCTCCTGTTGATTATTAG 1524 0.4285 MEERKFVCKYCNKKFPCGKSLGGHIRTHMSIEHTSPQSKEVRNNADDGVVKFDGGRKRKRDFGSEEAASGNLIYGLRDNPKQTTRLARSNAAVQKQRFCKECGKGFLSLKALCGHMACHSEKDKGTTTKFENNSGFSVKQKMLMMDSQSDTETSAPNYPRRSGRMRFKTVNSKTNDHPSSVPLANGSSPVSEVEQEQEEVARCLMLLSKDSTYRDRFVLPTESWDTRITSKNGKKSSVSNGFEIVEDKRKVVLCKNMKLKSAEIVDSDNSGSGYFRNGPRKLDLDVTVDKYTGNGEFKTPKVADRSESEFAQNYDTESRKMLIKNRGTRSIEPRKLILEDMDCDTTDRATKEQFINWKKRTSCNSLCQQNSIGVSCKKTPNGFHSEGSWKQESLNSEKTISGSYDSAYDESDESSTDTDAYPSPLPPSSKVINGKKTSKSKKKLKSKKSREHRCPICYRIFKSGQALGGHKRSHFVGGSEENTLVIKQGSPVVPCLIDLNLPAPVDY 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1447 507 ProSitePatterns Zinc finger C2H2 type domain signature. 454 474 IPR013087 -
Prci5g1447 507 SMART c2h2final6 97 119 IPR013087 -
Prci5g1447 507 SMART c2h2final6 452 474 IPR013087 -
Prci5g1447 507 SMART c2h2final6 6 28 IPR013087 -
Prci5g1447 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Prci5g1447 507 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 506 - -
Prci5g1447 507 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Prci5g1447 507 SUPERFAMILY beta-beta-alpha zinc fingers 4 119 IPR036236 -
Prci5g1447 507 MobiDBLite consensus disorder prediction 401 450 - -
Prci5g1447 507 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Prci5g1447 507 MobiDBLite consensus disorder prediction 170 190 - -
Prci5g1447 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Prci5g1447 507 MobiDBLite consensus disorder prediction 435 450 - -
Prci5g1447 507 Gene3D Classic Zinc Finger 1 60 - -
Prci5g1447 507 Pfam C2H2-type zinc finger 452 474 - -
Prci5g1447 507 Pfam C2H2-type zinc finger 99 121 - -
Prci5g1447 507 Pfam C2H2-type zinc finger 6 30 - -
Prci5g1447 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 452 474 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1447 Prci-Chr5 33718570 33720992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1447 1 506 C2H2 Transcription Factor Family AT1G26610 37.893 2.68e-76 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci5g1447 zf-C2H2_6 1.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1447 - - pcin:129310630 703.36