Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1439 ATGGCTTCTGAATCTGATGTCTCTGAGAATTCGTCCCTCTTTGAAAGCTTGTTCACATTCAGAGACCTTTCTGTGTTCTTACCCTTCATCTTAGGCTTCTCCACCGATTATCCCGGACGAGACAGTCAAGACCTGGATCAAGAAACCACAAATTCAGAAAATAGTAATACCCATGGTGAAAGAGTCGTCTTGATCAACCCCTTTACGCAAGGCATGGTGGTGATTGACGGTACTTCGAGCCTCGAGACTCTGTTCCACGAACTGGATGTGAAAAACGGGCAACCGCCGGCGTCGAAGGAGTCTATAGACGCGATGACGAGCGTGGAAATCGGACAAGACGAAGACGGCGAGTGTGTGATCTGTTTGGAGGAATGGGAGGTTGGTGGGGTAGCGAAAGAGATGCCTTGTCAGCACAAGTTTCATCAAAATTGTATAGAGAAGTGGTTGCGAATTCATGGATCTTGCCCTGTTTGTAGATACCAGATGCCTGTGGGTGAGAAAGAAGTGGGCAAGATAGATGAAGAAGAACGAGGAGGAGAGAGAAGGAGGGTTGGCAGAGAAGTTTGGGTGAGCTTTTCTTTTAGAAGTGAGAATACGAACCAAGCTCCTTCTGATAATTCCAGTGATCCTTCATCAAGTCCAAGAGGTGATTCTGAGGTAGAGAATTAG 669 0.4679 MASESDVSENSSLFESLFTFRDLSVFLPFILGFSTDYPGRDSQDLDQETTNSENSNTHGERVVLINPFTQGMVVIDGTSSLETLFHELDVKNGQPPASKESIDAMTSVEIGQDEDGECVICLEEWEVGGVAKEMPCQHKFHQNCIEKWLRIHGSCPVCRYQMPVGEKEVGKIDEEERGGERRRVGREVWVSFSFRSENTNQAPSDNSSDPSSSPRGDSEVEN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1439 222 Pfam Ring finger domain 117 159 IPR001841 -
Prci5g1439 222 SMART ring_2 118 158 IPR001841 -
Prci5g1439 222 MobiDBLite consensus disorder prediction 194 215 - -
Prci5g1439 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 163 - -
Prci5g1439 222 MobiDBLite consensus disorder prediction 194 222 - -
Prci5g1439 222 FunFam E3 ubiquitin-protein ligase RNF181 85 165 - -
Prci5g1439 222 SUPERFAMILY RING/U-box 101 163 - -
Prci5g1439 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 165 IPR013083 -
Prci5g1439 222 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1439 Prci-Chr5 33642535 33643689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1439 1 194 C3H Transcription Factor Family AT1G26800 48.756 2.37e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1439 - - cave:132177426 253.832