Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1437 ATGGATCTGCAAAACTTGCAAAATCAAAGTATGCATTTGGTTCTTTCCGCTGATGCAAAGCCAAGGCTGAAATGGACTCCTGAGCTTCACCAACGATTTCTTGATGCCGTTAATCAGCTTGGGGGTGCTGATAAGGCAACCCCTAAGAGTCTTTTGAGAGTGATGGCTATTCCAGGACTTACTTTGTACCACCTGAAGAGCCACTTACAGAAATTCAGACTTGCAAAAGACCAGCAACTAGAAACCTGCTGTGACAGAAAACAAGAAGAATACAGAGAAATCCAGAGCAGTGTTAGCCATTGCAAAAGGGAAATCTGCGTTGGGACTCAGAATCAGATGACTGACTTGCAGATAGCACAGGCTCTCCAAATGCAAATGGAAGTACAGGGGAAACTTTATGAACAACTTGAGGTGCAGAGGCATTTGCAGCTTCGAATTGAAGCTCAAGGGAAGTATTTACAGTCAGTGCTCAAGAAAGCGCAGGAAACACTTACAGCATACAGCTCTTCTTCCACTTCTGATACAAAACTTGCAAAAGCTGAGCTTTCTCGGTTATTGTCCATGATCAACAATGCTTGTCCAAGTTCTCCGATCTCAGAACTAACAGAGACAAAAGTGTTGAGTTCTAAGGAGGGGAAGAGGAAACAAAGTAGAGGGATTATGTGTTCAATGGAAAGTTCTTTGACATCTTCTGAGAGCTCTGGCTTAAAGGAAGAAAAGCAACGCAGGGATGAAAGAGGAGACCCTCAAAAATCTAATTCTACCACTTCAGTTGAACTTCAATTAATGGCCATTCGTTCAGTGGATGAAGCATCAAATGGCGATGCAAGTGATGAATCTAGTGGGAGAAGGAGAAGTGGAGGAACCAGTTATGATGGCGAAACGTGTGCTAAAAAGCAGAGAAAAATTGAGCTGTCAGAAATGCCCGACTTGAACAGGCAATACCAGAATGATGTTGATTCAAATTCCAAGGCTATTGATTTGAATCACTGA 993 0.427 MDLQNLQNQSMHLVLSADAKPRLKWTPELHQRFLDAVNQLGGADKATPKSLLRVMAIPGLTLYHLKSHLQKFRLAKDQQLETCCDRKQEEYREIQSSVSHCKREICVGTQNQMTDLQIAQALQMQMEVQGKLYEQLEVQRHLQLRIEAQGKYLQSVLKKAQETLTAYSSSSTSDTKLAKAELSRLLSMINNACPSSPISELTETKVLSSKEGKRKQSRGIMCSMESSLTSSESSGLKEEKQRRDERGDPQKSNSTTSVELQLMAIRSVDEASNGDASDESSGRRRSGGTSYDGETCAKKQRKIELSEMPDLNRQYQNDVDSNSKAIDLNH 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1437 330 Gene3D - 19 77 - -
Prci5g1437 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Prci5g1437 330 MobiDBLite consensus disorder prediction 220 234 - -
Prci5g1437 330 MobiDBLite consensus disorder prediction 204 330 - -
Prci5g1437 330 Pfam MYB-CC type transfactor, LHEQLE motif 116 163 IPR025756 -
Prci5g1437 330 MobiDBLite consensus disorder prediction 235 250 - -
Prci5g1437 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 254 IPR044848 GO:0003700
Prci5g1437 330 MobiDBLite consensus disorder prediction 310 330 - -
Prci5g1437 330 FunFam Myb family transcription factor 19 77 - -
Prci5g1437 330 SUPERFAMILY Homeodomain-like 19 76 IPR009057 -
Prci5g1437 330 Pfam Myb-like DNA-binding domain 22 71 IPR001005 -
Prci5g1437 330 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1437 Prci-Chr5 33640162 33642178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1437 11 267 G2-like Transcription Factor Family AT1G69580 53.650 3.35e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci5g1437 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1437 - - qsa:O6P43_033005 406.757