Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1432 ATGGGCAGGGTGAAGCTGAAAATAAAGAGGCTGGAGAGCACTAATGGGCGTCAGGCAACCTACGCTAAAAGGAAGAATGGAATTATGAAAAAGGCTTCGGAATTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCGTCTGGGAAGCCAGCACTCTGCAGAGGGAGGCGTAGTAACATAGAGGAGGTTATTGCAAAGTTTGCTCAACAAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAACATACAAGAATTTCTGGGTACAAGTGGTCAAACTATTGAGGACCTAAAAAATGATGCCACGCTATTACAAACTCGAATATCTGAAATACATACAAGATTAAGCCATTGGACTGAACCTGATAAAATCAACAGCGTGGAACAATTAGAACAGATGGAAAATTCTCTCAGGGGGTCAATTAATCAACTTCGATTGCGTAAGGAAAATATACAAAAGCAACAACTTGAATCATTGCAATGCAGTAACCAGTTCAATGAGTTGCATACTCCCTTCAGGATGAGTGCTGATCAGCATCTCCAACCTCTATCATGGATTGCCAACAATGACGGCCAACATATGGTTTTACCTGATGATTCATACTTGCTTCTTCACAAAGACACAGAGTGCTCCGCAAGCTCCTCTTTTGGGAGTTATGCAAGTTATCTTGGCTCAAGCCCAAAACCAGATCTTTCTAATTCTGGGCAAGAAAGTGGTGTCCTAAGTGACATGACAAGTACTGCTTCTCTGAGACTACAATTAGGCGGGCAGCTTCCGTACCTGCCGTACAATTTCAATCTACTGAGTGATATCAAGTTCCAGCCATCTGCAGAGATCAACCCACTTGAAAACCCCATAGATTATCATCCTAATAAAAGCTTTGAAGCTCCTAGACTTGCTTTCGAATCTAACCACCATGGATGGGATTCCACATCAGGGCCTTGTGCTGTTACCACCATGTTTGACGACTATTTGTATGCCCAGGCAAGTTTCCCTCAAGTAAACTTTGGCTTCTCCTAA 1080 0.4213 MGRVKLKIKRLESTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPSGKPALCRGRRSNIEEVIAKFAQQTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSGQTIEDLKNDATLLQTRISEIHTRLSHWTEPDKINSVEQLEQMENSLRGSINQLRLRKENIQKQQLESLQCSNQFNELHTPFRMSADQHLQPLSWIANNDGQHMVLPDDSYLLLHKDTECSASSSFGSYASYLGSSPKPDLSNSGQESGVLSDMTSTASLRLQLGGQLPYLPYNFNLLSDIKFQPSAEINPLENPIDYHPNKSFEAPRLAFESNHHGWDSTSGPCAVTTMFDDYLYAQASFPQVNFGFS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1432 359 Coils Coil 77 97 - -
Prci5g1432 359 CDD MADS 2 54 - -
Prci5g1432 359 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci5g1432 359 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Prci5g1432 359 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci5g1432 359 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci5g1432 359 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci5g1432 359 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Prci5g1432 359 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Prci5g1432 359 Coils Coil 147 174 - -
Prci5g1432 359 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
Prci5g1432 359 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Prci5g1432 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1432 Prci-Chr5 33544635 33549810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1432 1 352 Type I MADS-box Gene Family AT2G03060 47.644 1.53e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci5g1432 SRF-TF 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1432 - - lang:109356063 543.117