Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1427 ATGGGCAGGGTGAAGCTGAAAATAAAGAGGCTGGAGAGCACTAATGGGCGTCAGGCAACCTACGCTAAAAGGAAGAATGGAATTATGAAAAAGGCTTCGGAATTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCGTCTGGGAAGCCAGCACTCTGCAGAGGGAGGCGTAGTAACATAGAGGAGGTTATTGCAAAGTTTGCTCAACAAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAACATACAAGAATTTCTGGGTACAAGTGGTCAAACTATTGAGGACCTAAAAAATGATGCCACGCTATTACAAACTCGAATATCTGAAATACATACAAGATTAAGCCATTGGACTGAACCTGATAAAATCAACAGCGTGGAACAATTAGAACAGATGGAAAATTCTCTCAGGGGGTCAATTAATCAACTTCGATTGCGTAAGCAGGAAAATATACAAAAGCAACAACTTGAATCATTGCAATGCAGTAACCAGTTCAATGAGTTGCATACTCCCTTCAGGATGAGTGCTGATCAGCATCTCCAACCTCTATCATGGATTGCCAACAATGACGGCCAACATATGGTTTTACCTGATGATTCATACTTGCTTCTTCACAAAGACACAGAGTGCTCCGCAAGCTCCTCTTTTGGGAGTTATGCAAGTTATCTTGGCTCAAGCCCAAAACCAGATCTTTCTAATTCTGGGCAAGAAAGTGGTGTCCTAAGTGACATGACAAGTACTGCTTCTCTGAGACTACAATTAGGCGGGCAGCTTCCGTACCTGCCGTACAATTTCAATCTACTGAGTGATATCAAGTTCCAGCCATCTGCAGAGATCAACCCACTTGAAAACCCCATAGATTATCATCCTAATAAAAGCTTTGAAGCTCCTAGACTTGCTTTCGAATCTAACCACCATGGATGGGATTCCACATCAGGGCCTTGTGCTGTTACCACCATGTTTGACGACTATTTGTATGCCCAGGCAAGTTTCCCTCAAGTAAACTTTGGCTTCTCCTAA 1083 0.422 MGRVKLKIKRLESTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPSGKPALCRGRRSNIEEVIAKFAQQTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSGQTIEDLKNDATLLQTRISEIHTRLSHWTEPDKINSVEQLEQMENSLRGSINQLRLRKQENIQKQQLESLQCSNQFNELHTPFRMSADQHLQPLSWIANNDGQHMVLPDDSYLLLHKDTECSASSSFGSYASYLGSSPKPDLSNSGQESGVLSDMTSTASLRLQLGGQLPYLPYNFNLLSDIKFQPSAEINPLENPIDYHPNKSFEAPRLAFESNHHGWDSTSGPCAVTTMFDDYLYAQASFPQVNFGFS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1427 360 Coils Coil 77 97 - -
Prci5g1427 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Prci5g1427 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci5g1427 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci5g1427 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci5g1427 360 Coils Coil 147 167 - -
Prci5g1427 360 CDD MADS 2 54 - -
Prci5g1427 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci5g1427 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Prci5g1427 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Prci5g1427 360 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Prci5g1427 360 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Prci5g1427 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1427 Prci-Chr5 33544634 33549829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1427 1 353 Type I MADS-box Gene Family AT2G03060 47.382 1.32e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci5g1427 SRF-TF 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1427 - - lang:109356063 538.495