Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1414 ATGGAGCAGGGCCTCCCTCCTGGCTTCAGGTTTCACCCAACCGATGAAGAACTCATCGTGTATTACCTCTCTAACCAATACACATCAAATCCATGCCCTTATTCTATCATCCCAGAAGTTGATATCTACAAGTTTGATCCTTGGGACTTGCCTGAGAAAGCAGAGTTTGGAGAGAAAGAATGGTACTTCTTTAGCCCACGAGACAGGAAGTACCCAAATGGAGTGAGGCCAAACAGAGCGGCAGTGTCTGGGTATTGGAAGGCCACTGGGACCGATAAGGCCATCTTGAGTGGGTCGAAGCATATTGGGGTGAAGAAAGCTCTGGTTTTCTACAAAGGGAAGCCACCAAAAGGTGTCAAGACTGGTTGGATCATGCATGAGTATCGACTCCTTCATTCCACCACAACACAACCCAACAATCACCTTGGCTCCATGAGATTGGATGACTGGGTTTTGTGCAGGATCAAGAAGAAGAACACGGGGGAGACAATAATGGAGAAAGAGGAATTTCTCAGTACTGCGAATGGCAAAGAAACAGCTACAGGAAATTATTATTATTATAAGAGTGAGGAGCAAGAAATGATGAAACATGTTCCGAGGACTTGTTCAATTGCTCGTCTTGTGGGTATGGATTATTATCATCAGGGCTCATCATCATCAGTTTCACAGATATTTTCCGATCAACGCTATAATTCAACCTTTGATCTTCAAAATAACGCTTCCGATTCTAGAATAATAGATTCTTTTGTCGTCAAACCTCAGATATTATTGCCGGACAATAATTATGCAGAAGGAGATTCAGGGAAGTTTCAAGAGATGAAACAGAGTAGCAGCGTCCAACCACCAATGTTAGTAAACCAAGTGTATTATCTGCGAGGATATGGCCAATGA 891 0.4332 MEQGLPPGFRFHPTDEELIVYYLSNQYTSNPCPYSIIPEVDIYKFDPWDLPEKAEFGEKEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAILSGSKHIGVKKALVFYKGKPPKGVKTGWIMHEYRLLHSTTTQPNNHLGSMRLDDWVLCRIKKKNTGETIMEKEEFLSTANGKETATGNYYYYKSEEQEMMKHVPRTCSIARLVGMDYYHQGSSSSVSQIFSDQRYNSTFDLQNNASDSRIIDSFVVKPQILLPDNNYAEGDSGKFQEMKQSSSVQPPMLVNQVYYLRGYGQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1414 296 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Prci5g1414 296 ProSiteProfiles NAC domain profile. 5 158 IPR003441 GO:0003677|GO:0006355
Prci5g1414 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 222 - -
Prci5g1414 296 FunFam NAC transcription factor 14 162 - -
Prci5g1414 296 Gene3D NAC domain 14 162 IPR036093 GO:0003677|GO:0006355
Prci5g1414 296 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1414 Prci-Chr5 33437200 33439034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1414 5 212 NAC Transcription Factor Family AT1G69490 66.822 4.21e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci5g1414 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1414 - - adu:107489303 351.673