Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1412 ATGGTCAAGTCCTCATCGTGTTGCGAGAAACCAGCAGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCAGAAGCTCATGTCTTACATTCAACAACACGGCCACGGAAGCTGGTCTTCCTTGCCTGCAAAAGCTGGACTACGGAGATGTGGGAAGAGTTGCAGACTGAGATGGATAAATTATCTAAGTCCTGACATCAAACGAGGCAAGTTCAGTTTACAGGAAGACCAGACCATCATACAACTTCATGCTCTTTTTGGAAACAGATGGTCGGCCATAGCGCTTCACTTGCCAAAGAGAACAGACAACGAGATCAAGAATTACTGGAACACCCACCTTAAGAAGAGGCTCACCAGAATGGGTATAAACCCGTCCACCCACAAGCCCTTAAACGACGCCGTTAATGGCGACCAGTCCAGGGACGCGGCCAACCTCAGCCATATGGCTCAGTGGGAGACTGCTCGGCTCCAAGCCGAGGCCCGACAAGTCAGAGAATATTCGAAGCTGCAGCTCCAGAACCAGCAGCTCGGCTCGCCTCCAATGACTCGGCTCGTTCTCAACAAGATCACACCTTGGCCATCACCACCTCCGTGCCTCGACGTGCTCAAGGCATGGCAGAATTCGTGGTCGCCATCCACGTGGAAGCCCTCAACAGATCAGAACAACCCCAGAATGCATAGCATGTACGCCATGATGCTTGCCACCAACGACCTCAAGTCACCGGCGTCGACGTTGTGCTTCCCCGACGCCGTCGTTTCCAAGTCAAAATGTACGAATAGTACTGAAATCAATAAATGTTTACAACTTCCTTCGTCCTCCTCCACCACGGTCGCAAATGACAGTGGAATCAACGTCGTGAAAAGCTTGCGAAGCGACGACAGTATAATGGCAGCCATGGAAGAACTCCAATCAACAGTTTATAACTGTAATATGGAAGATCTCCATGATGACGATGTGTTGGTGTTTGGATTTAATGAGAACTCAGCCTCATCACCGCACGAAAACTTGGGAGTCTCAGGTGTTGGAGATGATTGGGAAGCCATTCTCGACCTTGTCAATGGCTCACTCTGA 1074 0.5037 MVKSSSCCEKPAGLKKGPWTPEEDQKLMSYIQQHGHGSWSSLPAKAGLRRCGKSCRLRWINYLSPDIKRGKFSLQEDQTIIQLHALFGNRWSAIALHLPKRTDNEIKNYWNTHLKKRLTRMGINPSTHKPLNDAVNGDQSRDAANLSHMAQWETARLQAEARQVREYSKLQLQNQQLGSPPMTRLVLNKITPWPSPPPCLDVLKAWQNSWSPSTWKPSTDQNNPRMHSMYAMMLATNDLKSPASTLCFPDAVVSKSKCTNSTEINKCLQLPSSSSTTVANDSGINVVKSLRSDDSIMAAMEELQSTVYNCNMEDLHDDDVLVFGFNENSASSPHENLGVSGVGDDWEAILDLVNGSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1412 357 Gene3D - 71 118 - -
Prci5g1412 357 SMART sant 15 65 IPR001005 -
Prci5g1412 357 SMART sant 68 116 IPR001005 -
Prci5g1412 357 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Prci5g1412 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Prci5g1412 357 Gene3D - 15 68 - -
Prci5g1412 357 FunFam MYB-related transcription factor 15 68 - -
Prci5g1412 357 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Prci5g1412 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Prci5g1412 357 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g1412 357 CDD SANT 71 114 IPR001005 -
Prci5g1412 357 CDD SANT 18 63 IPR001005 -
Prci5g1412 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 262 - -
Prci5g1412 357 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Prci5g1412 357 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Prci5g1412 357 FunFam MYB transcription factor 71 118 - -
Prci5g1412 357 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1412 Prci-Chr5 33322734 33324375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1412 5 176 MYB Transcription Factor Family AT3G01140 74.713 2.23e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1412 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1412 K09422 - gmx:100809025 380.178