Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1411 ATGGTGAAGTCATCGAACTCATCGTCGCGCGGTGAGAAGGTAGGGTTGAAGAAAGGGCCATGGACTTCTGAGGAAGACCAGAAGCTCATGGCTTACATTCAGCAACATGGCCATGGAAGTTGGTTTTCCTTGCCTGCAAAAGCTGGACTCCAGAGATGTGGGAAGAGCTGCAGACTAAGATGGACTAATTATCTAAGGCCTGACATCAAACGAGGCAAGTTCAGCTCACAGGAAGACCAAACCATCATTCGACTTCATGCTTTTCTTGGAAACAGATGGTCAGCTATAGCACTTCACTTGCCAAAAAGAACAGACAATGAGATCAAGAATCACTGGAACACCCGCCTCAAGAAGAAGCTCCTTAGAATGGGCATAGATCCCACCACTCACAAACCCATAAACGACACCGTACACGGCCACTCAGCCAACCTTAACCATATGGCTCAGTGGGAAACTGCCCGGCTCCAAGCTGAAACCAGACTAGTCAAAGAATCCAAGCTGCAGCTTCAGATCAACCGGCTCGGCTCCTCATTCTCTTCCCAGCCTTCACCGACGACTCGACTTAATTCACGATCGCCATCCATGTCTTCAACTTCGACTACTACTCCAGATAACATCCCCATGTACGCCATGATGCTCGCCGCCGACGACAACCTCAAGTCACCGACGTCGACATTGTGCTTCCCGGACACCAATTTCCTCAACCCCAACACTACTAATGGTAATATGATAACCACCTTTGGGCTTATCAATGAAAGCTTACTTCCTTCTTCTTCCAACTGCACCAACACTGCTGGGGAGGGTGGAGCTATGAAAGAAGCGAACGACTACGGCAGTACTGAACCATGGGAAAACACGGTGGGAAGCTTGGAAGTCGGCAACATTATGGTGGCAGTGGAAGCATTCAGATCATCAAAAGGGCATAACTGTAATAATAATTCCATGGAAGGTCTTCAAGGTGACGATGTGTTGGTGTATGGAATCAATGAGAACTGGCCACAGCAAAACCTAGGAGTCTTAAATGATGGGGAAGGAGAGAGCGCCAACTTTGAGGAGAAGCATTATTGGGAAACCATTCTCAGCTTCGTCAATGATTTTCCCCGATCACCTGCTGCTTTCCCTGAGTTGTGA 1131 0.4828 MVKSSNSSSRGEKVGLKKGPWTSEEDQKLMAYIQQHGHGSWFSLPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSSQEDQTIIRLHAFLGNRWSAIALHLPKRTDNEIKNHWNTRLKKKLLRMGIDPTTHKPINDTVHGHSANLNHMAQWETARLQAETRLVKESKLQLQINRLGSSFSSQPSPTTRLNSRSPSMSSTSTTTPDNIPMYAMMLAADDNLKSPTSTLCFPDTNFLNPNTTNGNMITTFGLINESLLPSSSNCTNTAGEGGAMKEANDYGSTEPWENTVGSLEVGNIMVAVEAFRSSKGHNCNNNSMEGLQGDDVLVYGINENWPQQNLGVLNDGEGESANFEEKHYWETILSFVNDFPRSPAAFPEL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1411 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Prci5g1411 376 CDD SANT 73 116 IPR001005 -
Prci5g1411 376 Gene3D - 17 70 - -
Prci5g1411 376 CDD SANT 20 65 IPR001005 -
Prci5g1411 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Prci5g1411 376 SMART sant 70 118 IPR001005 -
Prci5g1411 376 SMART sant 17 67 IPR001005 -
Prci5g1411 376 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Prci5g1411 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 237 - -
Prci5g1411 376 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g1411 376 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Prci5g1411 376 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Prci5g1411 376 Gene3D - 72 140 - -
Prci5g1411 376 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Prci5g1411 376 FunFam MYB transcription factor 72 133 - -
Prci5g1411 376 MobiDBLite consensus disorder prediction 173 203 - -
Prci5g1411 376 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Prci5g1411 376 FunFam MYB-related transcription factor 17 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1411 Prci-Chr5 33307205 33309151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1411 12 236 MYB Transcription Factor Family AT3G01140 59.914 1.59e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1411 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1411 K09422 - gmx:100799222 333.569