Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1400 ATGACAATTCTCCCTTGCCTGCTTCTTCAGACAACAAGGTCTCAGAAGAACCCACTGTTCCTCCTGGTGGGCCTTCATCTGCAAACTAAAGCGAACGCATCTCTTAAAGTAGATGATGGGAAGAAATTTATTCATGCAAGAAAACCTCAGGCATTAATTGCTGCAAGAAGACCAGACTCCGGTGGGAAAGAAGGTTCTGTGATCTCTCTTCTCGCCAACCACTTCCTCGTGCAATTCGATTCATCACAAAAAATTTACCATTACAATGTCGAAATCACTCCTAATCCCTCCAAGGAAGTTGCCAGAGAAATCAAACAGAAATTGGTTAACAACAATTCTGCAAGTTTTTCTGGTGCTGTGCCTGCATATGATGGGAGGAAGAATCTTTACAGTTCAATGGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTTCCAATCCACTCCAGCAAATTGGCATCACCTTACGGAGAAATCAATAACATGAGAGAGAAGAAAGAACAGCTTAAACTGTTTAGGATAAACATTAAATTAGTTTCCAAGATCAATGGGAAGGAATTGAGTAACTACTTGAGCAAAGAGGGAGATGACTGGGTTCCACTTCCACAGGATTATCTTCATGCTTTGGATGTAGTCTTGAGGGAGAGCCCAACCGAGAAGTGTGTACCTGTGGGTAGATCATTTTATTCAAGTTCAATGGGAAAAACCAGGGAGATTGGAGGAGGAGCTGTTGGATTCAGAGGGTTCTTTCAGAGTCTTCGACCAACACAACAAGGACTTGCTCTCAATGTAGATTTCTCTGTGACTGCTTTCCATGAGAGTATAGGAGTTATTTCATACTTGCAGAAGCGTCTTGGGTTTCTTCGAGATCTTTCTCAAAGAAAGACAACAAGTTTAACTGGTGAAGAAAGGAAGGAAGTGGAGAAGGCATTGAAGAATATCAGAGTCTTTGTTTGCCATAGAGAAACTGTGCAAAGATACCGTGTCTGTGGCTTAACTGAAGAAGCTACAGAAAATCTTTCGTTCGCTGATAGGGATGGAAAGAATTTGAGGCTTGTGAGTTACTTTAAGGATCACTATAACTATGACATTCAATTCAGGAAATTGCCCTGCTTGCAAATTAGCAGAAGCAAACCATGTTATCTCCCCATGGAGCTATGTGTGATCTGTGAAGGTCAGAAATTTCTTGGCAAGCTGTCTGATGATCAGACGGCAAAGATACTGAAGATGGGCTGCCAAAGACCAAGAGAACGGAAAGCCATCATCGAGGAAGTCATGAGAGGGGATGTGGGGCCTACCAGTGGCAACCAGGAAGCAGAATTTAAGCTCAACGTGTCACGAGAAATGACAAGGCTGACTGGGAGAATTCTTCACCCTCCCGAGCTAAAGCTTGGAGATGGAGGTAGAGTTAGAAACTTATTTCCCTCACGTCATGACCGCCAGTGGAACCTTCTTGATGGCCATGTATTTGAAGGAACTAAAATTGAAAGGTGGGCCCTGATAAGTTTTGGTGGCACACCTGAGCAGAAGTCTAACATCCCAAGATTCATAAACCAGCTATCTCAAAGGTGTGAACAATTGGGAATTTTTCTTAACAAGAATACAATCATTAGTCCTCAGTTTGAATCAAGCCACGTGCTTAACAATGTGAACCTCTTGGAATCCAAGCTCAAGAAAATCCAGAGAGCTGCCTCAAACAATCTCCAGCTGCTTATTTGCACAATGGAGAAAAAACACAAAGGATACGCAGATCTGAAGCGAATTGCTGAGACTAATGTTGGGGTTGTAAGCCAATGCTGCTTGTATCCAAATCTTACCAAGCTAAGTTCACAGTTTTTGGCTAATTTGGCCTTAAAAATCAATGCCAAGGTTGGTGGATGCACAGTTGCTCTTTACAATTCACTTCCTTCTCAAATCCCAAGACTATTTCAGATTGATGAGCCGGCCATTTTTATGGGTGCTGATGTGACACATCCTCATCCACTTGATGATTTCAATCCATCTATAGCTGCTGTTGTTGGCAGCATGAACTGGCCAACAGCAAACAAATACATTTCAAGAATGAGGTCTCAAACACACAGACAAGAGATAATCCAGGATCTTGGTGCTATGGTGGGTGAATTGCTTGATGATTTTTATCAGGAAGTAAAGAAACTTCCTGGGAGAATAATATTCTTCAGAGATGGGGTTAGTGAAACACAATTTTATAAAGTACTCGAAGAGGAATTGCAATCCATCAGAGGGGCGTGTTCCAAATTTCCTGACTATAAACCATTCATTACTTTTGCAGTAGTACAGAAGAGGCACCATACAAGGTTGTTTCCTGTTGAAACTGACCAATCCTCCAACCAAAACCATTTTTTATACGAGAATATTCCCCCAGGGACTGTGGTTGATTCTGTGATCACTCACCCAAAAGAATTTGATTTCTATCTCTGCAGCCACTGGGGTGTGAAAGGAACAAGCAGGCCAACTCATTACCATGTTCTTTGGGATGAAAACCAGTTCACTTCCGATGAACTACAGAAGCTGGTTTACAATTTATGTTACACTTTTGTGAGGTGCACCAAGCCAATTTCTTTGGTCCCACCTGCTTATTATGCACATTTGGCAGCTTACAGAGGCAGACTCTACCTAGAGAGATCAGAGTCCTCGGGTTTATACGGAAGCACAACTACATTATCAAGAGCTGCCCCTCCAAAGACAGCACCTCTACCAAGACTCAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 2763 0.4224 MTILPCLLLQTTRSQKNPLFLLVGLHLQTKANASLKVDDGKKFIHARKPQALIAARRPDSGGKEGSVISLLANHFLVQFDSSQKIYHYNVEITPNPSKEVAREIKQKLVNNNSASFSGAVPAYDGRKNLYSSMEFQNDKLEFYISLPIHSSKLASPYGEINNMREKKEQLKLFRINIKLVSKINGKELSNYLSKEGDDWVPLPQDYLHALDVVLRESPTEKCVPVGRSFYSSSMGKTREIGGGAVGFRGFFQSLRPTQQGLALNVDFSVTAFHESIGVISYLQKRLGFLRDLSQRKTTSLTGEERKEVEKALKNIRVFVCHRETVQRYRVCGLTEEATENLSFADRDGKNLRLVSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPRERKAIIEEVMRGDVGPTSGNQEAEFKLNVSREMTRLTGRILHPPELKLGDGGRVRNLFPSRHDRQWNLLDGHVFEGTKIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLNKNTIISPQFESSHVLNNVNLLESKLKKIQRAASNNLQLLICTMEKKHKGYADLKRIAETNVGVVSQCCLYPNLTKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFQIDEPAIFMGADVTHPHPLDDFNPSIAAVVGSMNWPTANKYISRMRSQTHRQEIIQDLGAMVGELLDDFYQEVKKLPGRIIFFRDGVSETQFYKVLEEELQSIRGACSKFPDYKPFITFAVVQKRHHTRLFPVETDQSSNQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESSGLYGSTTTLSRAAPPKTAPLPRLSENIKKLMFYC 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1400 920 FunFam Protein argonaute 7 270 396 - -
Prci5g1400 920 Pfam Argonaute linker 1 domain 224 273 IPR014811 -
Prci5g1400 920 ProSiteProfiles Piwi domain profile. 571 881 IPR003165 GO:0003676
Prci5g1400 920 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 55 882 - -
Prci5g1400 920 SMART DUF1785_2 223 275 IPR014811 -
Prci5g1400 920 Gene3D - 643 920 IPR036397 GO:0003676
Prci5g1400 920 CDD Piwi_ago-like 441 880 IPR045246 -
Prci5g1400 920 CDD PAZ_argonaute_like 278 391 - -
Prci5g1400 920 ProSiteProfiles PAZ domain profile. 283 392 IPR003100 GO:0005515
Prci5g1400 920 Pfam PAZ domain 289 408 IPR003100 GO:0005515
Prci5g1400 920 Gene3D paz domain 269 396 - -
Prci5g1400 920 Pfam Piwi domain 574 878 IPR003165 GO:0003676
Prci5g1400 920 SMART PAZ_2_a_3 283 423 IPR003100 GO:0005515
Prci5g1400 920 SUPERFAMILY PAZ domain 270 428 IPR036085 GO:0005515
Prci5g1400 920 FunFam protein argonaute 10-like 639 920 - -
Prci5g1400 920 FunFam Argonaute 10 457 633 - -
Prci5g1400 920 SMART Piwi_a_2 571 881 IPR003165 GO:0003676
Prci5g1400 920 Gene3D - 457 633 - -
Prci5g1400 920 SUPERFAMILY Ribonuclease H-like 556 881 IPR012337 -
Prci5g1400 920 Pfam N-terminal domain of argonaute 68 214 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1400 Prci-Chr5 33161094 33164959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1400 62 920 Eukaryotic Initiation Factors Gene Family AT1G48410 42.140 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1400 K11593 - gmx:100797755 1615.13