Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1399 ATGGAAGATACAGAGGAGTCCAATGGCAAGAAGAAATTTACAAGCCAAAGAAGGAGGAGCTTGAGGGTAGGAGCCAACAACTCGCATGAGCATCACTATCAGAATCATCAGAACAAGTGTCAGGTGTACTGTCCGGCTCTTCTTCCCTTACCTTCTCTTTTGCCTCTGCAACTAGCTTTGACGCCACCGTTCCCTCAAAACCAAACCATCAAATCCAAAACTCATTTCCAGAAATGTCCATGCAAACTCAATGACAATTCTCCCTTGCCTGCTTCTTCAGACAACAAGGTCTCAGAAGAACCCACTGTTCCTCCTGCTCAGGTGGGCCTTCATCTGCAAACTAAAGCGAACGCATCTCTTAAAGTAGATGATGGGAAGAAATTTATTCATGCAAGAAAACCTCAGGCATTAATTGCTGCAAGAAGACCAGACTCCGGTGGGAAAGAAGGTTCTGTGATCTCTCTTCTCGCCAACCACTTCCTCGTGCAATTCGATTCATCACAAAAAATTTACCATTACAATGTCGAAATCACTCCTAATCCCTCCAAGGAAGTTGCCAGAGAAATCAAACAGAAATTGGTTAACAACAATTCTGCAAGTTTTTCTGGTGCTGTGCCTGCATATGATGGGAGGAAGAATCTTTACAGTTCAATGGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTTCCAATCCACTCCAGCAAATTGGCATCACCTTACGGAGAAATCAATAACATGAGAGAGAAGAAAGAACAGCTTAAACTGTTTAGGATAAACATTAAATTAGTTTCCAAGATCAATGGGAAGGAATTGAGTAACTACTTGAGCAAAGAGGGAGATGACTGGGTTCCACTTCCACAGGATTATCTTCATGCTTTGGATGTAGTCTTGAGGGAGAGCCCAACCGAGAAGTGTGTACCTGTGGGTAGATCATTTTATTCAAGTTCAATGGGAAAAACCAGGGAGATTGGAGGAGGAGCTGTTGGATTCAGAGGGTTCTTTCAGAGTCTTCGACCAACACAACAAGGACTTGCTCTCAATGTAGATTTCTCTGTGACTGCTTTCCATGAGAGTATAGGAGTTATTTCATACTTGCAGAAGCGTCTTGGGTTTCTTCGAGATCTTTCTCAAAGAAAGACAACAAGTTTAACTGGTGAAGAAAGGAAGGAAGTGGAGAAGGCATTGAAGAATATCAGAGTCTTTGTTTGCCATAGAGAAACTGTGCAAAGATACCGTGTCTGTGGCTTAACTGAAGAAGCTACAGAAAATCTTTCGTTCGCTGATAGGGATGGAAAGAATTTGAGGCTTGTGAGTTACTTTAAGGATCACTATAACTATGACATTCAATTCAGGAAATTGCCCTGCTTGCAAATTAGCAGAAGCAAACCATGTTATCTCCCCATGGAGCTATGTGTGATCTGTGAAGGTCAGAAATTTCTTGGCAAGCTGTCTGATGATCAGACGGCAAAGATACTGAAGATGGGCTGCCAAAGACCAAGAGAACGGAAAGCCATCATCGAGGAAGTCATGAGAGGGGATGTGGGGCCTACCAGTGGCAACCAGGAAGCAGAATTTAAGCTCAACGTGTCACGAGAAATGACAAGGCTGACTGGGAGAATTCTTCACCCTCCCGAGCTAAAGCTTGGAGATGGAGGTAGAGTTAGAAACTTATTTCCCTCACGTCATGACCGCCAGTGGAACCTTCTTGATGGCCATGTATTTGAAGGAACTAAAATTGAAAGGTGGGCCCTGATAAGTTTTGGTGGCACACCTGAGCAGAAGTCTAACATCCCAAGATTCATAAACCAGCTATCTCAAAGGTGTGAACAATTGGGAATTTTTCTTAACAAGAATACAATCATTAGTCCTCAGTTTGAATCAAGCCACGTGCTTAACAATGTGAACCTCTTGGAATCCAAGCTCAAGAAAATCCAGAGAGCTGCCTCAAACAATCTCCAGCTGCTTATTTGCACAATGGAGAAAAAACACAAAGGATACGCAGATCTGAAGCGAATTGCTGAGACTAATGTTGGGGTTGTAAGCCAATGCTGCTTGTATCCAAATCTTACCAAGCTAAGTTCACAGTTTTTGGCTAATTTGGCCTTAAAAATCAATGCCAAGGTTGGTGGATGCACAGTTGCTCTTTACAATTCACTTCCTTCTCAAATCCCAAGACTATTTCAGATTGATGAGCCGGCCATTTTTATGGGTGCTGATGTGACACATCCTCATCCACTTGATGATTTCAATCCATCTATAGCTGCTGTTGTTGGCAGCATGAACTGGCCAACAGCAAACAAATACATTTCAAGAATGAGGTCTCAAACACACAGACAAGAGATAATCCAGGATCTTGGTGCTATGGTGGGTGAATTGCTTGATGATTTTTATCAGGAAGTAAAGAAACTTCCTGGGAGAATAATATTCTTCAGAGATGGGGTTAGTGAAACACAATTTTATAAAGTACTCGAAGAGGAATTGCAATCCATCAGAGGGGCGTGTTCCAAATTTCCTGACTATAAACCATTCATTACTTTTGCAGTAGTACAGAAGAGGCACCATACAAGGTTGTTTCCTGTTGAAACTGACCAATCCTCCAACCAAAACCATTTTTTATACGAGAATATTCCCCCAGGGACTGTGGTTGATTCTGTGATCACTCACCCAAAAGAATTTGATTTCTATCTCTGCAGCCACTGGGGTGTGAAAGGAACAAGCAGGCCAACTCATTACCATGTTCTTTGGGATGAAAACCAGTTCACTTCCGATGAACTACAGAAGCTGGTTTACAATTTATGTTACACTTTTGTGAGGTGCACCAAGCCAATTTCTTTGGTCCCACCTGCTTATTATGCACATTTGGCAGCTTACAGAGGCAGACTCTACCTAGAGAGATCAGAGTCCTCGGGTTTATACGGAAGCACAACTACATTATCAAGAGCTGCCCCTCCAAAGACAGCACCTCTACCAAGACTCAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 3018 0.4251 MEDTEESNGKKKFTSQRRRSLRVGANNSHEHHYQNHQNKCQVYCPALLPLPSLLPLQLALTPPFPQNQTIKSKTHFQKCPCKLNDNSPLPASSDNKVSEEPTVPPAQVGLHLQTKANASLKVDDGKKFIHARKPQALIAARRPDSGGKEGSVISLLANHFLVQFDSSQKIYHYNVEITPNPSKEVAREIKQKLVNNNSASFSGAVPAYDGRKNLYSSMEFQNDKLEFYISLPIHSSKLASPYGEINNMREKKEQLKLFRINIKLVSKINGKELSNYLSKEGDDWVPLPQDYLHALDVVLRESPTEKCVPVGRSFYSSSMGKTREIGGGAVGFRGFFQSLRPTQQGLALNVDFSVTAFHESIGVISYLQKRLGFLRDLSQRKTTSLTGEERKEVEKALKNIRVFVCHRETVQRYRVCGLTEEATENLSFADRDGKNLRLVSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPRERKAIIEEVMRGDVGPTSGNQEAEFKLNVSREMTRLTGRILHPPELKLGDGGRVRNLFPSRHDRQWNLLDGHVFEGTKIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLNKNTIISPQFESSHVLNNVNLLESKLKKIQRAASNNLQLLICTMEKKHKGYADLKRIAETNVGVVSQCCLYPNLTKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFQIDEPAIFMGADVTHPHPLDDFNPSIAAVVGSMNWPTANKYISRMRSQTHRQEIIQDLGAMVGELLDDFYQEVKKLPGRIIFFRDGVSETQFYKVLEEELQSIRGACSKFPDYKPFITFAVVQKRHHTRLFPVETDQSSNQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESSGLYGSTTTLSRAAPPKTAPLPRLSENIKKLMFYC 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1399 1005 FunFam Protein argonaute 7 355 481 - -
Prci5g1399 1005 Pfam Argonaute linker 1 domain 309 358 IPR014811 -
Prci5g1399 1005 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 133 967 - -
Prci5g1399 1005 SMART DUF1785_2 308 360 IPR014811 -
Prci5g1399 1005 MobiDBLite consensus disorder prediction 1 20 - -
Prci5g1399 1005 Gene3D - 728 1005 IPR036397 GO:0003676
Prci5g1399 1005 Pfam N-terminal domain of argonaute 153 299 IPR032474 -
Prci5g1399 1005 SMART Piwi_a_2 656 966 IPR003165 GO:0003676
Prci5g1399 1005 SUPERFAMILY Ribonuclease H-like 641 966 IPR012337 -
Prci5g1399 1005 FunFam Argonaute 10 542 718 - -
Prci5g1399 1005 Gene3D - 542 718 - -
Prci5g1399 1005 ProSiteProfiles PAZ domain profile. 368 477 IPR003100 GO:0005515
Prci5g1399 1005 Pfam Piwi domain 659 963 IPR003165 GO:0003676
Prci5g1399 1005 SMART PAZ_2_a_3 368 508 IPR003100 GO:0005515
Prci5g1399 1005 CDD PAZ_argonaute_like 363 476 - -
Prci5g1399 1005 SUPERFAMILY PAZ domain 355 513 IPR036085 GO:0005515
Prci5g1399 1005 Pfam PAZ domain 374 493 IPR003100 GO:0005515
Prci5g1399 1005 Gene3D paz domain 354 481 - -
Prci5g1399 1005 ProSiteProfiles Piwi domain profile. 656 966 IPR003165 GO:0003676
Prci5g1399 1005 FunFam protein argonaute 10-like 724 1005 - -
Prci5g1399 1005 CDD Piwi_ago-like 526 965 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1399 Prci-Chr5 33161094 33165506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1399 147 1005 Eukaryotic Initiation Factors Gene Family AT1G48410 42.140 0.0 649