Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1360 ATGGAGGAAAAGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCATCTGGGAAGTCTCTGGGTGGACACATCAAGACTCACATGACTACTGAACATTCTTCATCTCAATCCAAGAAAGGTAGAACGAATGCCGATGATAGTGTCGTCAAGTTCGATGATGGAAGGAAGAGGAAGAGAGATTTTGGGTCTGAAGAAGCTGCTTCCGAAAATCCAATTTTTGGTCTTCGAGAGAATCCCAAGAAAACAACGAGGTTCGTACATTCCAACAACGCTGCTTCACAACAAGAGAGGTTCTGCAAAGAATGTGGGAAAGGCTTTCTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTGTCATTCGGAGAAAGATAAAGGGACGACGAACAAGTTTCAGAACAATTCTGGGCCTGGGTTTGGAATGAAGCAGAAATTGGTGGTGGATAGTCAATCGGATACTGAGACATCTGCTCCAAATCACCCCAGGAGATCCAGAAGAATGAGGTTCAAGACCGTGAATACTGATAAAAATGATCAACCTTCTTTTGTTTCTTTGGCGAATGGTTCTTCCTCTGTGTCTGAGGTGGAGCAGGAGCAAGAAGAGGTCGCAAGGTGTTTGATGTTATTGTCCAAAGACTCTAGCCATAGAGGTCGTTTTGTTTTTCCAGCTGAGTCGTCGGAGAACAATTCTGTTGTGGTAGAGGCAAAATCACCGTCTGTGGACACTATTCCTCTCAACAATGGTAAAAAAAGTTGTGTGTATAATGGTTTTGAGATCGTGGAGAAGGTGGTGCAGTATAATGACATGAAGTTGAAGTCTGCTGAGATTGTCGATTCTGATAATTCAGATTCTGGGTATTTCAGAAATGGTCACAAAAAGTTGGATTTGGATGTTTCAATTGATGGGTACCCTAGGAATGGGGGATTCAAGACGCCTAAATTGGAAGTCAGATCTGGGCGTGAGTTTTATCAGAACTATGACGCTGAATTGAGGAAGAAGATGCTAATCAAGAACAGAGGAGGAACCAGAAGCAATGAACCCAGAAAACTAATTTTGGAGGATGTGGACTACAATACAACAAAAAAAGGAGCGACAAGGAAAGAGTTCATCAATTGGAGAAAGAGACGATGTTATGATTCTCTTCGCCAAAACAATTCAGTTGGTGTTACTTGCAAAAGGACACCAAATGGTTTTTACAATGAGGGGTCATTGAACCCAGAGAGCTTAAACAGTGAAAAAATTATCAGTGGCTCTAAGGATTCAGCAGACGAGAGTGATGAAAGCAGCACAGACACTGATGCTTCTCCTGCTCCGAGACCTCATGGCAGCAAGGTCATCAATGGAAAGAAGACCAGCAAGTTCAAGAAGAAATTGAAGTCAAAGAAAAGTAGAGACCATGAATGTCCTATCTGCTACAAAATTTTCAAGTCAGGCCAAGCGTTAGGAGGTCACAAAAGGTCTCATTTTGTTGGAGGTTCTGAAGAGAACACAGTGGTGATCAAACATGGACCTCCTTTGGTTCCATGCCTGATTGATCTCAATCTACCTGCTCCTGTTGACGATTAA 1566 0.4285 MEEKKFVCKYCNKKYPSGKSLGGHIKTHMTTEHSSSQSKKGRTNADDSVVKFDDGRKRKRDFGSEEAASENPIFGLRENPKKTTRFVHSNNAASQQERFCKECGKGFLSLKALCGHMACHSEKDKGTTNKFQNNSGPGFGMKQKLVVDSQSDTETSAPNHPRRSRRMRFKTVNTDKNDQPSFVSLANGSSSVSEVEQEQEEVARCLMLLSKDSSHRGRFVFPAESSENNSVVVEAKSPSVDTIPLNNGKKSCVYNGFEIVEKVVQYNDMKLKSAEIVDSDNSDSGYFRNGHKKLDLDVSIDGYPRNGGFKTPKLEVRSGREFYQNYDAELRKKMLIKNRGGTRSNEPRKLILEDVDYNTTKKGATRKEFINWRKRRCYDSLRQNNSVGVTCKRTPNGFYNEGSLNPESLNSEKIISGSKDSADESDESSTDTDASPAPRPHGSKVINGKKTSKFKKKLKSKKSRDHECPICYKIFKSGQALGGHKRSHFVGGSEENTVVIKHGPPLVPCLIDLNLPAPVDD 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1360 521 Pfam C2H2-type zinc finger 6 29 - -
Prci5g1360 521 Pfam C2H2-type zinc finger 100 122 - -
Prci5g1360 521 Pfam C2H2-type zinc finger 466 488 - -
Prci5g1360 521 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Prci5g1360 521 MobiDBLite consensus disorder prediction 148 190 - -
Prci5g1360 521 MobiDBLite consensus disorder prediction 174 190 - -
Prci5g1360 521 ProSitePatterns Zinc finger C2H2 type domain signature. 468 488 IPR013087 -
Prci5g1360 521 MobiDBLite consensus disorder prediction 446 461 - -
Prci5g1360 521 MobiDBLite consensus disorder prediction 389 416 - -
Prci5g1360 521 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Prci5g1360 521 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 520 - -
Prci5g1360 521 MobiDBLite consensus disorder prediction 27 43 - -
Prci5g1360 521 MobiDBLite consensus disorder prediction 44 66 - -
Prci5g1360 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 466 488 IPR013087 -
Prci5g1360 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Prci5g1360 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Prci5g1360 521 MobiDBLite consensus disorder prediction 123 142 - -
Prci5g1360 521 Gene3D Classic Zinc Finger 1 68 - -
Prci5g1360 521 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Prci5g1360 521 MobiDBLite consensus disorder prediction 389 461 - -
Prci5g1360 521 MobiDBLite consensus disorder prediction 17 73 - -
Prci5g1360 521 SMART c2h2final6 98 120 IPR013087 -
Prci5g1360 521 SMART c2h2final6 466 488 IPR013087 -
Prci5g1360 521 SMART c2h2final6 6 28 IPR013087 -
Prci5g1360 521 SUPERFAMILY beta-beta-alpha zinc fingers 99 488 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1360 Prci-Chr5 32864981 32867430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1360 1 521 C2H2 Transcription Factor Family AT1G26610 38.026 2.12e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci5g1360 zf-C2H2_6 7.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1360 - - pcin:129310630 1015.37